Variant report

Variant	rs73157363
Chromosome Location	chr5:97644495-97644496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73153320	1.00[AMR][1000 genomes]
rs73153322	1.00[AMR][1000 genomes]
rs73153329	1.00[AMR][1000 genomes]
rs73153330	1.00[AMR][1000 genomes]
rs73153334	1.00[AMR][1000 genomes]
rs73153346	1.00[AMR][1000 genomes]
rs73155387	1.00[AMR][1000 genomes]
rs73155388	1.00[AMR][1000 genomes]
rs73155392	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97637600-97649600	Weak transcription	Fetal Stomach	stomach
2	chr5:97637800-97644600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97642800-97644800	Enhancers	NHDF-Ad	bronchial
4	chr5:97643000-97644800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:97643000-97644800	Enhancers	HMEC	breast
6	chr5:97643000-97644800	Enhancers	HUVEC	blood vessel
7	chr5:97643000-97644800	Enhancers	NHLF	lung
8	chr5:97643000-97644800	Enhancers	Osteobl	bone
9	chr5:97643000-97645000	Enhancers	NHEK	skin
10	chr5:97643000-97645200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:97643000-97645400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:97643000-97648200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:97643200-97644800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:97643200-97644800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:97643200-97644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:97643200-97644800	Enhancers	NH-A	brain
17	chr5:97643200-97645200	Enhancers	HSMM	muscle
18	chr5:97643200-97645800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:97643200-97647000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:97643600-97644800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:97643800-97644800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:97644000-97644800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:97644000-97646000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:97644000-97646200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr5:97644200-97644800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:97644200-97645200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:97644400-97644600	Enhancers	HSMMtube	muscle
28	chr5:97644400-97645000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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