Variant report

Variant	rs7315801
Chromosome Location	chr12:10893992-10893993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11053917	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11053977	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1108542	0.90[CHD][hapmap]
rs12226912	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs12423741	0.80[EUR][1000 genomes]
rs12581675	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7133840	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7136530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7310690	1.00[ASW][hapmap];0.93[CEU][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7316817	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs7963875	0.90[CHD][hapmap]
rs9668997	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7315801	APOLD1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10892800-10895600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr12:10892800-10895800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:10893200-10894000	Enhancers	HepG2	liver
4	chr12:10893800-10894800	Weak transcription	GM12878-XiMat	blood
5	chr12:10893800-10895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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