Variant report

Variant	rs73159254
Chromosome Location	chr5:97723720-97723721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10043870	1.00[EUR][1000 genomes]
rs10057215	1.00[EUR][1000 genomes]
rs10062168	1.00[EUR][1000 genomes]
rs10477671	1.00[EUR][1000 genomes]
rs13360238	1.00[EUR][1000 genomes]
rs1455421	1.00[AMR][1000 genomes]
rs2124262	1.00[AMR][1000 genomes]
rs57186366	1.00[AMR][1000 genomes]
rs57817463	1.00[AMR][1000 genomes]
rs60190260	1.00[EUR][1000 genomes]
rs60740011	1.00[EUR][1000 genomes]
rs60839554	1.00[EUR][1000 genomes]
rs6859395	1.00[EUR][1000 genomes]
rs6868573	1.00[EUR][1000 genomes]
rs6871563	1.00[EUR][1000 genomes]
rs6872658	1.00[EUR][1000 genomes]
rs6877771	1.00[EUR][1000 genomes]
rs6898848	1.00[AMR][1000 genomes]
rs73143803	1.00[AMR][1000 genomes]
rs73143804	1.00[AMR][1000 genomes]
rs73143839	1.00[AMR][1000 genomes]
rs73143842	1.00[AMR][1000 genomes]
rs73143845	1.00[AMR][1000 genomes]
rs73143847	1.00[AMR][1000 genomes]
rs73143853	1.00[AMR][1000 genomes]
rs73143856	1.00[AMR][1000 genomes]
rs73143857	1.00[AMR][1000 genomes]
rs73143859	1.00[AMR][1000 genomes]
rs73143862	1.00[AMR][1000 genomes]
rs73143866	1.00[AMR][1000 genomes]
rs73143879	1.00[AMR][1000 genomes]
rs73155402	1.00[EUR][1000 genomes]
rs73157304	1.00[EUR][1000 genomes]
rs73157315	1.00[EUR][1000 genomes]
rs73159206	1.00[AMR][1000 genomes]
rs73159235	1.00[AMR][1000 genomes]
rs73159240	1.00[AMR][1000 genomes]
rs73159247	1.00[AMR][1000 genomes]
rs73772968	1.00[EUR][1000 genomes]
rs73772970	1.00[EUR][1000 genomes]
rs73773002	1.00[EUR][1000 genomes]
rs73777006	1.00[EUR][1000 genomes]
rs7726347	1.00[EUR][1000 genomes]
rs9326840	1.00[EUR][1000 genomes]
rs9764305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97714200-97725800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:97721400-97733600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:97721800-97727800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:97723200-97725600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:97723600-97724200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links