Variant report

Variant	rs73159269
Chromosome Location	chr5:97733868-97733869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11953430	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11956963	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17165859	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17165863	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17165940	0.83[AMR][1000 genomes]
rs4018612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57319934	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59053313	0.81[AFR][1000 genomes]
rs60839554	0.83[AMR][1000 genomes]
rs60902343	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61474805	0.83[AFR][1000 genomes]
rs73143820	0.83[AMR][1000 genomes]
rs73143823	0.83[AMR][1000 genomes]
rs73143829	0.83[AMR][1000 genomes]
rs73143830	0.83[AMR][1000 genomes]
rs73143840	0.83[AMR][1000 genomes]
rs73143852	0.83[AMR][1000 genomes]
rs73157383	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73159234	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73159246	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7725330	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97728200-97734400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:97732600-97734600	Enhancers	NHDF-Ad	bronchial
3	chr5:97732600-97735000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:97733000-97734600	Enhancers	Brain Cingulate Gyrus	brain
5	chr5:97733200-97735200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:97733400-97737200	Weak transcription	Osteobl	bone
7	chr5:97733600-97734000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:97733800-97734000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:97733800-97734400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:97733800-97734600	Enhancers	Brain Substantia Nigra	brain
11	chr5:97733800-97737000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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