Variant report

Variant	rs73163467
Chromosome Location	chr13:30802739-30802740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30796105..30798319-chr13:30802158..30804551,2	MCF-7	breast:
2	chr13:30796832..30799585-chr13:30801538..30805408,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17632920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17633024	0.98[ASN][1000 genomes]
rs17633078	0.81[AFR][1000 genomes]
rs17689474	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17689523	0.98[ASN][1000 genomes]
rs2277450	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213617	0.89[ASN][1000 genomes]
rs61946929	0.82[ASN][1000 genomes]
rs73163465	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73163468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73163469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73163472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73163474	0.98[ASN][1000 genomes]
rs7327725	0.80[ASN][1000 genomes]
rs7999644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv528192	chr13:30800293-30805992	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30765600-30807000	Weak transcription	Gastric	stomach
2	chr13:30766400-30804400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr13:30770600-30803200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:30774400-30812600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr13:30774600-30802800	Weak transcription	Lung	lung
6	chr13:30774600-30805200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:30775000-30803000	Weak transcription	Esophagus	oesophagus
8	chr13:30790000-30807000	Weak transcription	Small Intestine	intestine
9	chr13:30791000-30807200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:30791000-30808800	Weak transcription	Brain Hippocampus Middle	brain
11	chr13:30791000-30811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:30795800-30805600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:30796600-30807000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr13:30796600-30808600	Weak transcription	Brain Substantia Nigra	brain
16	chr13:30796800-30802800	Weak transcription	Fetal Intestine Large	intestine
17	chr13:30796800-30802800	Weak transcription	K562	blood
18	chr13:30796800-30831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:30797000-30808600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr13:30797000-30823400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:30797200-30802800	Weak transcription	Fetal Intestine Small	intestine
22	chr13:30797400-30802800	Weak transcription	Fetal Stomach	stomach
23	chr13:30797800-30814800	Weak transcription	Placenta	Placenta
24	chr13:30798800-30803400	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr13:30798800-30804400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr13:30798800-30810800	Strong transcription	Fetal Thymus	thymus
27	chr13:30799000-30805600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:30799200-30802800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:30799200-30804000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr13:30799200-30805600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:30799200-30805600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr13:30799200-30805600	Strong transcription	Liver	Liver
33	chr13:30799200-30805600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr13:30799200-30811800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr13:30799200-30831400	Weak transcription	Aorta	Aorta
36	chr13:30799400-30802800	Weak transcription	Left Ventricle	heart
37	chr13:30799400-30803000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:30799400-30803000	Weak transcription	Fetal Heart	heart
39	chr13:30799400-30803200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:30799400-30803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr13:30799400-30804000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:30799400-30804800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:30799400-30805400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr13:30799400-30805600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr13:30799400-30805600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr13:30799400-30805600	Strong transcription	Fetal Lung	lung
47	chr13:30799400-30805800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr13:30799400-30805800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr13:30799400-30808600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr13:30799400-30809000	Weak transcription	HSMMtube	muscle

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