Variant report

Variant	rs7316603
Chromosome Location	chr12:87700589-87700590
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55838952	0.89[AFR][1000 genomes]
rs57047996	0.89[AFR][1000 genomes]
rs57950149	0.89[AFR][1000 genomes]
rs58062174	1.00[AFR][1000 genomes]
rs58506010	0.89[AFR][1000 genomes]
rs58729951	0.89[AFR][1000 genomes]
rs59692288	0.89[AFR][1000 genomes]
rs59948778	0.89[AFR][1000 genomes]
rs59978005	0.89[AFR][1000 genomes]
rs60036842	0.89[AFR][1000 genomes]
rs60512762	0.89[AFR][1000 genomes]
rs60675356	0.89[AFR][1000 genomes]
rs60920912	0.89[AFR][1000 genomes]
rs61081451	0.80[AFR][1000 genomes]
rs61132966	0.89[AFR][1000 genomes]
rs7307994	1.00[AFR][1000 genomes]
rs7310855	1.00[AFR][1000 genomes]
rs7313566	1.00[AFR][1000 genomes]
rs7980130	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87697200-87700600	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:87699600-87704400	Weak transcription	Fetal Brain Female	brain
3	chr12:87699800-87702800	Weak transcription	Fetal Brain Male	brain
4	chr12:87700200-87701800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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