Variant report

Variant	rs7317424
Chromosome Location	chr13:96359198-96359199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:96328293..96330423-chr13:96358976..96360516,2	K562	blood:
2	chr13:96357533..96360111-chr13:96360254..96362838,2	K562	blood:
3	chr13:96356335..96359312-chr13:96360276..96362407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17878852	1.00[AFR][1000 genomes]
rs17881893	1.00[AFR][1000 genomes]
rs7331052	1.00[YRI][hapmap]
rs7338510	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96331400-96362200	Weak transcription	HSMM	muscle
2	chr13:96332400-96360400	Weak transcription	NHDF-Ad	bronchial
3	chr13:96337600-96360800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr13:96337600-96362200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr13:96337600-96364200	Weak transcription	Ovary	ovary
6	chr13:96345200-96362200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr13:96347000-96377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:96347800-96359400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:96348600-96360400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:96349200-96362200	Weak transcription	Fetal Intestine Large	intestine
11	chr13:96349600-96362200	Weak transcription	Dnd41	blood
12	chr13:96349800-96363000	Weak transcription	Fetal Lung	lung
13	chr13:96350800-96363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:96350800-96365400	Weak transcription	HSMMtube	muscle
15	chr13:96351000-96359200	Weak transcription	Spleen	Spleen
16	chr13:96351000-96359800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:96351000-96360200	Weak transcription	Aorta	Aorta
18	chr13:96351000-96362200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr13:96351000-96362400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr13:96351000-96362600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:96351000-96362600	Weak transcription	Adipose Nuclei	Adipose
22	chr13:96351000-96363600	Weak transcription	Colonic Mucosa	Colon
23	chr13:96351000-96365800	Weak transcription	Brain Anterior Caudate	brain
24	chr13:96351000-96365800	Weak transcription	Fetal Brain Male	brain
25	chr13:96351000-96368600	Weak transcription	Lung	lung
26	chr13:96351400-96359400	Weak transcription	Gastric	stomach
27	chr13:96351400-96359400	Weak transcription	Pancreas	Pancrea
28	chr13:96351400-96359400	Weak transcription	Right Atrium	heart
29	chr13:96351400-96360000	Weak transcription	Left Ventricle	heart
30	chr13:96352400-96359400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr13:96353600-96359200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr13:96353600-96360400	Weak transcription	Colon Smooth Muscle	Colon
33	chr13:96354200-96364600	Weak transcription	Brain Angular Gyrus	brain
34	chr13:96355000-96362200	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:96355000-96364800	Weak transcription	Esophagus	oesophagus
36	chr13:96355600-96364000	Weak transcription	HepG2	liver
37	chr13:96355800-96360600	Weak transcription	Liver	Liver
38	chr13:96355800-96362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr13:96355800-96364000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr13:96356000-96360200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr13:96356000-96360600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:96356000-96365200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr13:96356000-96372400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr13:96356200-96360000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr13:96356200-96363200	Weak transcription	HMEC	breast
46	chr13:96356400-96360600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr13:96356400-96362000	Weak transcription	Fetal Intestine Small	intestine
48	chr13:96356400-96363800	Weak transcription	Fetal Kidney	kidney
49	chr13:96356600-96362200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr13:96356600-96363000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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