Variant report

Variant	rs73175663
Chromosome Location	chr2:11352239-11352240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11345703..11347462-chr2:11350332..11352446,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10170599	1.00[EUR][1000 genomes]
rs13410951	1.00[EUR][1000 genomes]
rs16857212	1.00[EUR][1000 genomes]
rs16857295	1.00[EUR][1000 genomes]
rs2037105	1.00[EUR][1000 genomes]
rs56953480	1.00[EUR][1000 genomes]
rs58092863	1.00[EUR][1000 genomes]
rs58855966	1.00[EUR][1000 genomes]
rs61646530	1.00[EUR][1000 genomes]
rs73175666	1.00[EUR][1000 genomes]
rs73175691	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73177207	1.00[EUR][1000 genomes]
rs73177213	1.00[EUR][1000 genomes]
rs73177223	1.00[EUR][1000 genomes]
rs73187657	1.00[EUR][1000 genomes]
rs73187662	1.00[EUR][1000 genomes]
rs73187664	1.00[EUR][1000 genomes]
rs7591945	1.00[EUR][1000 genomes]
rs868393	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395022	chr2:11316915-11426380	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1013570	chr2:11321519-11405246	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
2	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
3	chr2:11297600-11394400	Weak transcription	Right Ventricle	heart
4	chr2:11299200-11357000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:11310600-11433000	Weak transcription	Pancreas	Pancrea
6	chr2:11314600-11364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:11315800-11367400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:11316200-11354200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:11318600-11359200	Weak transcription	Fetal Heart	heart
10	chr2:11319000-11364200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:11320800-11377000	Strong transcription	HepG2	liver
12	chr2:11326000-11356600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:11328800-11367600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:11329200-11364400	Strong transcription	Liver	Liver
15	chr2:11329200-11369200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:11330200-11353400	Weak transcription	Gastric	stomach
17	chr2:11332400-11357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr2:11333400-11386200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:11333800-11353400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:11334400-11363600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:11336200-11354400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:11337000-11367400	Weak transcription	Brain Angular Gyrus	brain
23	chr2:11337600-11356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:11337600-11362600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr2:11338000-11354000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:11338400-11367400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr2:11338600-11373400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:11339800-11356200	Weak transcription	Stomach Mucosa	stomach
29	chr2:11339800-11359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:11339800-11360000	Weak transcription	Spleen	Spleen
31	chr2:11339800-11382600	Weak transcription	Esophagus	oesophagus
32	chr2:11340200-11355000	Weak transcription	Brain Substantia Nigra	brain
33	chr2:11340600-11369400	Weak transcription	Colonic Mucosa	Colon
34	chr2:11340800-11354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:11340800-11361200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:11341200-11352400	Weak transcription	Brain Anterior Caudate	brain
37	chr2:11341400-11353600	Weak transcription	Fetal Brain Male	brain
38	chr2:11341400-11354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:11341400-11355800	Weak transcription	Brain Germinal Matrix	brain
40	chr2:11341400-11358400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr2:11341600-11353000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:11341600-11384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr2:11342400-11356200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:11342600-11353200	Weak transcription	NHEK	skin
45	chr2:11343200-11352400	Weak transcription	GM12878-XiMat	blood
46	chr2:11343200-11355600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:11344400-11353400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr2:11344400-11368400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr2:11345000-11353800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:11345000-11361600	Strong transcription	Fetal Intestine Large	intestine

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