Variant report

Variant	rs73175666
Chromosome Location	chr2:11369932-11369933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11335792..11337450-chr2:11368534..11370356,2	MCF-7	breast:
2	chr2:11356854..11358667-chr2:11369917..11371992,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10170599	1.00[EUR][1000 genomes]
rs13410951	1.00[EUR][1000 genomes]
rs16857212	1.00[EUR][1000 genomes]
rs16857295	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2037105	1.00[EUR][1000 genomes]
rs56953480	1.00[EUR][1000 genomes]
rs58092863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58855966	1.00[EUR][1000 genomes]
rs61646530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175663	1.00[EUR][1000 genomes]
rs73175691	1.00[EUR][1000 genomes]
rs73177207	1.00[EUR][1000 genomes]
rs73177213	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73177223	1.00[EUR][1000 genomes]
rs73187657	1.00[EUR][1000 genomes]
rs73187662	1.00[EUR][1000 genomes]
rs73187664	1.00[EUR][1000 genomes]
rs7591945	1.00[EUR][1000 genomes]
rs868393	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395022	chr2:11316915-11426380	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1013570	chr2:11321519-11405246	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526038	chr2:11369078-11489531	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
2	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
3	chr2:11297600-11394400	Weak transcription	Right Ventricle	heart
4	chr2:11310600-11433000	Weak transcription	Pancreas	Pancrea
5	chr2:11320800-11377000	Strong transcription	HepG2	liver
6	chr2:11333400-11386200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:11338600-11373400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:11339800-11382600	Weak transcription	Esophagus	oesophagus
9	chr2:11341600-11384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:11352600-11411200	Weak transcription	Thymus	Thymus
11	chr2:11352800-11424000	Weak transcription	HSMMtube	muscle
12	chr2:11353200-11374800	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:11354200-11376400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:11354400-11382600	Weak transcription	Ovary	ovary
15	chr2:11354400-11388000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:11354600-11423800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:11355200-11379800	Weak transcription	Psoas Muscle	Psoas
18	chr2:11355400-11379800	Weak transcription	NHEK	skin
19	chr2:11355800-11376200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr2:11356400-11371800	Weak transcription	Primary T cells from cord blood	blood
21	chr2:11357000-11377400	Weak transcription	Brain Germinal Matrix	brain
22	chr2:11357800-11379800	Weak transcription	HMEC	breast
23	chr2:11359000-11382000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr2:11360400-11396400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:11360800-11375200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:11360800-11382800	Weak transcription	Spleen	Spleen
27	chr2:11361000-11372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:11361000-11372200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:11361000-11372200	Weak transcription	Fetal Stomach	stomach
30	chr2:11361000-11374800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:11361000-11378000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:11361000-11379600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:11361000-11380000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:11361000-11380200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:11361000-11382000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:11361000-11383800	Weak transcription	Fetal Kidney	kidney
37	chr2:11361000-11397000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr2:11361000-11397400	Weak transcription	Left Ventricle	heart
39	chr2:11361000-11399200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr2:11361000-11400200	Weak transcription	Gastric	stomach
41	chr2:11361000-11410800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr2:11361000-11411200	Weak transcription	Fetal Thymus	thymus
43	chr2:11361000-11416600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:11361200-11378200	Weak transcription	NH-A	brain
45	chr2:11361200-11425600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:11361400-11373200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr2:11361600-11380000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr2:11361600-11380000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:11361600-11396800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr2:11364000-11387000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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