Variant report

Variant	rs73177142
Chromosome Location	chr12:86290735-86290736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10082857	0.83[ASN][1000 genomes]
rs10779220	0.83[ASN][1000 genomes]
rs10863094	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863111	0.83[ASN][1000 genomes]
rs10863112	0.83[ASN][1000 genomes]
rs10863113	0.83[ASN][1000 genomes]
rs10863114	0.83[ASN][1000 genomes]
rs10863121	0.83[ASN][1000 genomes]
rs10863124	0.83[ASN][1000 genomes]
rs11117089	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117115	0.83[ASN][1000 genomes]
rs11117118	0.83[ASN][1000 genomes]
rs11117122	0.83[ASN][1000 genomes]
rs11117124	0.83[ASN][1000 genomes]
rs11117129	0.83[ASN][1000 genomes]
rs11611607	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11615948	0.83[ASN][1000 genomes]
rs12369468	1.00[ASN][1000 genomes]
rs12370270	1.00[ASN][1000 genomes]
rs17354637	0.83[ASN][1000 genomes]
rs2897186	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143239	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919774	0.83[ASN][1000 genomes]
rs56224424	0.90[ASN][1000 genomes]
rs61929365	0.90[ASN][1000 genomes]
rs61929367	0.90[ASN][1000 genomes]
rs61929393	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61929394	0.83[ASN][1000 genomes]
rs61929395	0.83[ASN][1000 genomes]
rs61929399	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61929421	1.00[ASN][1000 genomes]
rs61929424	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930913	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61930914	0.90[ASN][1000 genomes]
rs61930921	0.90[ASN][1000 genomes]
rs61930925	0.90[ASN][1000 genomes]
rs61930957	0.90[ASN][1000 genomes]
rs7132262	1.00[ASN][1000 genomes]
rs7135154	1.00[ASN][1000 genomes]
rs7303256	0.83[ASN][1000 genomes]
rs73176252	0.83[ASN][1000 genomes]
rs73177158	0.90[ASN][1000 genomes]
rs73177179	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7966131	0.83[ASN][1000 genomes]
rs7972773	0.83[ASN][1000 genomes]
rs7973694	0.83[ASN][1000 genomes]
rs7975310	0.83[ASN][1000 genomes]
rs7976573	0.83[ASN][1000 genomes]
rs9651977	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86290600-86293200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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