Variant report

Variant	rs73177169
Chromosome Location	chr12:86318554-86318555
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86317858..86318633-chr12:86345266..86346124,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10082857	0.92[ASN][1000 genomes]
rs10779220	0.92[ASN][1000 genomes]
rs10863111	0.92[ASN][1000 genomes]
rs10863112	0.92[ASN][1000 genomes]
rs10863113	0.92[ASN][1000 genomes]
rs10863114	0.92[ASN][1000 genomes]
rs10863124	0.92[ASN][1000 genomes]
rs11117115	0.92[ASN][1000 genomes]
rs11117118	0.92[ASN][1000 genomes]
rs11117122	0.92[ASN][1000 genomes]
rs11117124	0.92[ASN][1000 genomes]
rs11117129	0.92[ASN][1000 genomes]
rs11608539	0.84[ASN][1000 genomes]
rs11611607	0.92[ASN][1000 genomes]
rs11615948	0.92[ASN][1000 genomes]
rs17354637	0.92[ASN][1000 genomes]
rs4919774	0.92[ASN][1000 genomes]
rs56224424	0.82[ASN][1000 genomes]
rs61929365	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61929367	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61929389	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61929393	0.92[ASN][1000 genomes]
rs61929394	0.92[ASN][1000 genomes]
rs61929395	0.92[ASN][1000 genomes]
rs61930914	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61930921	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61930925	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61930957	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61931135	0.93[AMR][1000 genomes]
rs7303256	0.92[ASN][1000 genomes]
rs73176252	0.92[ASN][1000 genomes]
rs73177158	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73177167	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177179	0.92[ASN][1000 genomes]
rs73187654	0.82[AMR][1000 genomes]
rs7966131	0.92[ASN][1000 genomes]
rs7972773	0.92[ASN][1000 genomes]
rs7973694	0.92[ASN][1000 genomes]
rs7975310	0.92[ASN][1000 genomes]
rs7976573	0.92[ASN][1000 genomes]
rs9651977	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86317800-86318600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:86317800-86318800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:86317800-86318800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:86318000-86319000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:86318200-86318800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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