Variant report

Variant	rs73177952
Chromosome Location	chr3:119921974-119921975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119917539..119919805-chr3:119921736..119924200,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11922813	1.00[AFR][1000 genomes]
rs73177937	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119918600-119923200	Weak transcription	Lung	lung
2	chr3:119919600-119922000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:119919600-119923400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:119920000-119922400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr3:119920400-119923200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:119921200-119922200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:119921200-119922600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr3:119921200-119922800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:119921400-119922200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:119921400-119922200	Enhancers	Brain Angular Gyrus	brain
11	chr3:119921400-119922200	Enhancers	Brain Anterior Caudate	brain
12	chr3:119921400-119922200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:119921400-119922200	Enhancers	Colon Smooth Muscle	Colon
14	chr3:119921400-119922200	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:119921400-119922400	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:119921400-119922400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:119921400-119922400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:119921400-119922400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:119921400-119922400	Enhancers	Brain Cingulate Gyrus	brain
20	chr3:119921400-119922400	Enhancers	Fetal Lung	lung
21	chr3:119921400-119922400	Enhancers	Ovary	ovary
22	chr3:119921400-119922400	Enhancers	Right Atrium	heart
23	chr3:119921400-119922400	Enhancers	Hela-S3	cervix
24	chr3:119921400-119922400	Enhancers	HUVEC	blood vessel
25	chr3:119921400-119922800	Enhancers	Psoas Muscle	Psoas
26	chr3:119921400-119923000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:119921400-119923000	Enhancers	Primary B cells from cord blood	blood
28	chr3:119921400-119923000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:119921400-119923200	Enhancers	Adipose Nuclei	Adipose
30	chr3:119921400-119923800	Enhancers	Liver	Liver
31	chr3:119921400-119923800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr3:119921600-119922000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:119921600-119922200	Weak transcription	Fetal Muscle Leg	muscle
34	chr3:119921600-119922200	Enhancers	Osteobl	bone
35	chr3:119921600-119922400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:119921600-119922400	Enhancers	NHDF-Ad	bronchial
37	chr3:119921800-119922200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr3:119921800-119922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:119921800-119922200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr3:119921800-119922200	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr3:119921800-119922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:119921800-119922200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:119921800-119922200	Enhancers	Fetal Kidney	kidney
44	chr3:119921800-119922200	Enhancers	NHEK	skin
45	chr3:119921800-119922400	Enhancers	HMEC	breast

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