Variant report

Variant	rs73183110
Chromosome Location	chr2:11878600-11878601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11878418..11879254-chr2:11919121..11919879,2	MCF-7	breast:
2	chr2:11875528..11877148-chr2:11877418..11878938,2	MCF-7	breast:
3	chr2:11878332..11879441-chr2:11918884..11919993,17	MCF-7	breast:
4	chr2:11850515..11852161-chr2:11877592..11880491,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59408163	0.93[AFR][1000 genomes]
rs73183192	1.00[AMR][1000 genomes]
rs73183196	1.00[AMR][1000 genomes]
rs893348	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv580973	chr2:11864946-11898931	Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv580974	chr2:11867841-11898931	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11874800-11878800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:11875000-11878800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:11875200-11883000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:11876000-11878600	Weak transcription	Colonic Mucosa	Colon
5	chr2:11876000-11878600	Weak transcription	Hela-S3	cervix
6	chr2:11876200-11878600	Weak transcription	Liver	Liver
7	chr2:11876800-11878600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:11877000-11882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:11877000-11883400	Weak transcription	Right Atrium	heart
10	chr2:11877200-11878600	Weak transcription	Psoas Muscle	Psoas
11	chr2:11878400-11878600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:11878400-11879200	Enhancers	Right Ventricle	heart
13	chr2:11878400-11879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:11878400-11879600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:11878400-11880000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:11878600-11878800	Enhancers	Colonic Mucosa	Colon
17	chr2:11878600-11878800	Enhancers	Fetal Intestine Small	intestine
18	chr2:11878600-11878800	Enhancers	Fetal Thymus	thymus
19	chr2:11878600-11878800	Enhancers	HepG2	liver
20	chr2:11878600-11878800	Enhancers	K562	blood
21	chr2:11878600-11879000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:11878600-11879000	Enhancers	Primary B cells from peripheral blood	blood
23	chr2:11878600-11879000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr2:11878600-11879000	Enhancers	Brain Cingulate Gyrus	brain
25	chr2:11878600-11879000	Enhancers	Rectal Smooth Muscle	rectum
26	chr2:11878600-11879000	Bivalent Enhancer	GM12878-XiMat	blood
27	chr2:11878600-11879200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:11878600-11879200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr2:11878600-11879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:11878600-11879200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:11878600-11879200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:11878600-11879200	Enhancers	Ovary	ovary
33	chr2:11878600-11879200	Enhancers	Psoas Muscle	Psoas
34	chr2:11878600-11879200	Enhancers	Stomach Mucosa	stomach
35	chr2:11878600-11879200	Flanking Active TSS	Hela-S3	cervix
36	chr2:11878600-11879400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr2:11878600-11879400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:11878600-11879400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:11878600-11879400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:11878600-11879400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:11878600-11879400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:11878600-11879400	Enhancers	HMEC	breast
43	chr2:11878600-11879600	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr2:11878600-11879600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:11878600-11879600	Enhancers	Liver	Liver
46	chr2:11878600-11879600	Enhancers	Placenta	Placenta
47	chr2:11878600-11879600	Enhancers	A549	lung
48	chr2:11878600-11879600	Enhancers	Osteobl	bone
49	chr2:11878600-11879800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:11878600-11879800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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