Variant report

Variant	rs73184436
Chromosome Location	chr13:51105823-51105824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:51105797-51106573	A549	lung:	n/a	chr13:51106232-51106250
2	SMC3	chr13:51105605-51107176	SK-N-SH	brain:	n/a	chr13:51106234-51106248
3	CTCF	chr13:51105734-51106467	SK-N-SH	brain:	n/a	chr13:51106232-51106250
4	RAD21	chr13:51105725-51106784	SK-N-SH	brain:	n/a	chr13:51106230-51106249
5	CTCF	chr13:51105800-51105950	HFF-Myc	foreskin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50698162..50700615-chr13:51105796..51107576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229323	TF binding region
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11838378	1.00[AFR][1000 genomes]
rs11841965	1.00[EUR][1000 genomes]
rs41284832	1.00[EUR][1000 genomes]
rs73184428	1.00[EUR][1000 genomes]
rs73184429	1.00[EUR][1000 genomes]
rs73184440	0.98[EUR][1000 genomes]
rs74078321	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51102000-51106000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:51102200-51106000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:51103800-51110600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:51104000-51106200	Enhancers	Liver	Liver
5	chr13:51104000-51106400	Weak transcription	Thymus	Thymus
6	chr13:51104000-51106800	Enhancers	Osteobl	bone
7	chr13:51104400-51106200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:51104400-51106800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:51104600-51106000	Weak transcription	Adipose Nuclei	Adipose
10	chr13:51104600-51106000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:51104600-51106600	Weak transcription	HMEC	breast
12	chr13:51104600-51106600	Weak transcription	HUVEC	blood vessel
13	chr13:51104600-51107000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:51104800-51108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:51104800-51110600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:51105000-51106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr13:51105600-51106200	Enhancers	HSMM	muscle
18	chr13:51105600-51107000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:51105800-51106000	Enhancers	Brain Angular Gyrus	brain
20	chr13:51105800-51106000	Enhancers	Colon Smooth Muscle	Colon
21	chr13:51105800-51106000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr13:51105800-51106000	Enhancers	Dnd41	blood
23	chr13:51105800-51106200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr13:51105800-51106200	Enhancers	Fetal Heart	heart
25	chr13:51105800-51106200	Enhancers	HSMMtube	muscle
26	chr13:51105800-51106200	Enhancers	NHDF-Ad	bronchial
27	chr13:51105800-51107200	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links