Variant report

Variant	rs73185829
Chromosome Location	chr7:101583727-101583728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101574113..101579725-chr7:101580632..101589310,14	MCF-7	breast:
2	chr7:101568282..101570634-chr7:101582586..101584152,2	MCF-7	breast:
3	chr7:101455300..101463809-chr7:101582792..101593292,40	MCF-7	breast:
4	chr7:101514433..101518580-chr7:101582721..101585796,4	MCF-7	breast:
5	chr7:101583393..101585802-chr7:101586668..101590490,4	MCF-7	breast:
6	chr7:101554382..101556899-chr7:101581254..101583900,2	K562	blood:
7	chr7:101580274..101583226-chr7:101583511..101585560,4	MCF-7	breast:
8	chr7:101583066..101585594-chr7:101646947..101648936,2	MCF-7	breast:
9	chr7:101582848..101590446-chr7:101646237..101653992,20	MCF-7	breast:
10	chr7:101583272..101586097-chr7:101589522..101591483,2	K562	blood:
11	chr7:101582943..101584775-chr7:101877100..101879982,2	MCF-7	breast:
12	chr7:101582536..101585354-chr7:101767160..101769888,2	MCF-7	breast:
13	chr7:101582741..101590045-chr7:101612112..101621417,29	MCF-7	breast:
14	chr7:101511680..101514939-chr7:101582566..101587455,5	MCF-7	breast:
15	chr7:101457338..101463673-chr7:101582596..101588609,15	MCF-7	breast:
16	chr7:101583175..101586097-chr7:101587882..101593351,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs112513	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2906656	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs407366	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs445345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs455130	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4727512	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101561200-101584000	Weak transcription	Hela-S3	cervix
2	chr7:101567000-101596000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr7:101570200-101597000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:101571600-101587400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:101575800-101587400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:101577200-101584000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:101577600-101595600	Weak transcription	Primary T cells from cord blood	blood
8	chr7:101578200-101612000	Weak transcription	HepG2	liver
9	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:101579400-101586000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:101579600-101584000	Weak transcription	Pancreas	Pancrea
12	chr7:101579600-101584000	Weak transcription	Thymus	Thymus
13	chr7:101579800-101584600	Enhancers	GM12878-XiMat	blood
14	chr7:101580200-101584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:101580400-101584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:101580400-101584000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:101580400-101584000	Weak transcription	Fetal Kidney	kidney
18	chr7:101580400-101584000	Weak transcription	Gastric	stomach
19	chr7:101580400-101584000	Weak transcription	K562	blood
20	chr7:101580400-101584000	Weak transcription	NHEK	skin
21	chr7:101580400-101584400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:101580400-101585200	Weak transcription	HUVEC	blood vessel
23	chr7:101580400-101585600	Weak transcription	Small Intestine	intestine
24	chr7:101580400-101587600	Weak transcription	Spleen	Spleen
25	chr7:101580600-101583800	Weak transcription	A549	lung
26	chr7:101580600-101584000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:101580600-101584000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:101580600-101584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:101580600-101584000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:101580600-101584000	Weak transcription	Esophagus	oesophagus
31	chr7:101580600-101584200	Weak transcription	Aorta	Aorta
32	chr7:101580600-101584200	Weak transcription	Ovary	ovary
33	chr7:101580600-101584400	Weak transcription	Brain Angular Gyrus	brain
34	chr7:101580600-101584400	Weak transcription	HSMMtube	muscle
35	chr7:101580600-101584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:101580600-101584600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:101580600-101584600	Weak transcription	NHDF-Ad	bronchial
38	chr7:101580600-101584800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:101580600-101584800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:101580600-101584800	Weak transcription	NHLF	lung
41	chr7:101580600-101585000	Weak transcription	HSMM	muscle
42	chr7:101580600-101585800	Weak transcription	Lung	lung
43	chr7:101580600-101586000	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:101580600-101590600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:101580600-101590800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:101580600-101591200	Weak transcription	Brain Substantia Nigra	brain
47	chr7:101580800-101583800	Weak transcription	Fetal Lung	lung
48	chr7:101580800-101584000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:101580800-101584000	Weak transcription	Liver	Liver
50	chr7:101580800-101584000	Weak transcription	Brain Anterior Caudate	brain

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