Variant report

Variant	rs73185860
Chromosome Location	chr7:101673889-101673890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr7:101673799-101674451	GM12878	blood:	n/a	n/a
2	PML	chr7:101673678-101674338	GM12878	blood:	n/a	n/a
3	TBL1XR1	chr7:101673887-101674283	GM12878	blood:	n/a	n/a
4	YY1	chr7:101673863-101674259	GM12878	blood:	n/a	n/a
5	FOXM1	chr7:101673676-101674492	GM12878	blood:	n/a	n/a
6	MEF2A	chr7:101673868-101674368	GM12878	blood:	n/a	n/a
7	CEBPB	chr7:101673839-101674404	GM12878	blood:	n/a	n/a
8	RUNX3	chr7:101673697-101674448	GM12878	blood:	n/a	n/a
9	NFIC	chr7:101673837-101674380	GM12878	blood:	n/a	n/a
10	MTA3	chr7:101673780-101674419	GM12878	blood:	n/a	n/a
11	NFATC1	chr7:101673851-101674357	GM12878	blood:	n/a	n/a
12	MAX	chr7:101673764-101674280	GM12878	blood:	n/a	n/a
13	MEF2C	chr7:101673746-101674352	GM12878	blood:	n/a	n/a
14	BCLAF1	chr7:101673836-101674435	GM12878	blood:	n/a	n/a
15	ATF2	chr7:101673858-101674327	GM12878	blood:	n/a	n/a
16	IKZF1	chr7:101673771-101674353	GM12878	blood:	n/a	n/a
17	RAD21	chr7:101673880-101674269	GM12878	blood:	n/a	n/a
18	EP300	chr7:101673745-101674317	GM12878	blood:	n/a	n/a
19	BHLHE40	chr7:101673824-101674323	GM12878	blood:	n/a	n/a
20	FOXM1	chr7:101673816-101674377	GM12878	blood:	n/a	n/a
21	MEF2A	chr7:101673787-101674485	GM12878	blood:	n/a	n/a
22	ZNF384	chr7:101673861-101674197	GM12878	blood:	n/a	n/a
23	RUNX3	chr7:101673578-101674441	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101673753..101675283-chr7:101675530..101677556,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272544	TF binding region
ENSG00000272544	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10274188	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488042	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12534969	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494372	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158902	0.92[ASN][1000 genomes]
rs28461243	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668902	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56392048	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405966	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7799663	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1027574	chr7:101654060-101718950	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101642200-101674600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:101642400-101675400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:101642800-101697600	Weak transcription	Primary B cells from cord blood	blood
4	chr7:101643000-101675600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:101648200-101681400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:101648200-101688000	Weak transcription	Ovary	ovary
7	chr7:101652400-101683200	Weak transcription	Right Ventricle	heart
8	chr7:101652800-101688400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:101653000-101688200	Weak transcription	Colonic Mucosa	Colon
10	chr7:101653200-101685200	Weak transcription	HSMMtube	muscle
11	chr7:101656000-101682800	Weak transcription	Psoas Muscle	Psoas
12	chr7:101656000-101689200	Weak transcription	Aorta	Aorta
13	chr7:101656800-101681400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:101657000-101681400	Weak transcription	Osteobl	bone
15	chr7:101657200-101677000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:101664600-101676400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:101665600-101688000	Weak transcription	Brain Angular Gyrus	brain
18	chr7:101666600-101681400	Weak transcription	NHLF	lung
19	chr7:101667200-101688200	Weak transcription	Brain Substantia Nigra	brain
20	chr7:101667600-101675200	Weak transcription	Esophagus	oesophagus
21	chr7:101667600-101676800	Weak transcription	Brain Germinal Matrix	brain
22	chr7:101667600-101685200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:101667600-101685200	Weak transcription	NH-A	brain
24	chr7:101667600-101688000	Weak transcription	Brain Anterior Caudate	brain
25	chr7:101667600-101688000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:101667600-101688200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:101667600-101688400	Weak transcription	Fetal Brain Female	brain
28	chr7:101668000-101707200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr7:101668200-101682600	Weak transcription	Left Ventricle	heart
30	chr7:101668200-101683200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:101668200-101688000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:101668600-101676800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:101668600-101694200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:101668800-101682600	Weak transcription	Right Atrium	heart
35	chr7:101669600-101674200	Enhancers	Thymus	Thymus
36	chr7:101670400-101676600	Strong transcription	Fetal Intestine Small	intestine
37	chr7:101670400-101681400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:101670800-101674400	Strong transcription	HepG2	liver
39	chr7:101671200-101674400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:101671200-101675200	Strong transcription	Fetal Intestine Large	intestine
41	chr7:101671200-101675800	Strong transcription	Fetal Stomach	stomach
42	chr7:101671200-101677200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr7:101671400-101674400	Genic enhancers	Fetal Thymus	thymus
44	chr7:101671400-101674600	Weak transcription	Fetal Kidney	kidney
45	chr7:101671400-101674800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:101671400-101676400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:101671600-101674400	Strong transcription	Lung	lung
48	chr7:101671600-101674600	Strong transcription	Fetal Muscle Leg	muscle
49	chr7:101671800-101688000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:101671800-101688400	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links