Variant report

Variant	rs73185898
Chromosome Location	chr7:101727633-101727634
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101458477..101462561-chr7:101726892..101729209,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs365397	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366345	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367773	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370760	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372321	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372711	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372989	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs376183	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs377587	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377612	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379347	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380934	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381145	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384436	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393074	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402294	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403883	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404523	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405073	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405141	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406012	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs409420	0.96[EUR][1000 genomes]
rs411844	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412332	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412524	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413348	1.00[ASN][1000 genomes]
rs420709	1.00[ASN][1000 genomes]
rs421154	1.00[ASN][1000 genomes]
rs421430	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425577	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294126	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430154	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431821	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432002	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432600	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs438908	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441160	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443159	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443293	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729771	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101707200-101738000	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
3	chr7:101715200-101728600	Weak transcription	Colonic Mucosa	Colon
4	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr7:101715600-101728600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
9	chr7:101715800-101732600	Weak transcription	Fetal Kidney	kidney
10	chr7:101715800-101732800	Weak transcription	Aorta	Aorta
11	chr7:101715800-101741000	Weak transcription	Gastric	stomach
12	chr7:101715800-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:101716000-101736600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:101717800-101741200	Weak transcription	Pancreas	Pancrea
18	chr7:101718000-101732800	Weak transcription	Esophagus	oesophagus
19	chr7:101718600-101736600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr7:101720800-101732600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:101722800-101727800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:101723200-101729000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
23	chr7:101723400-101732600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr7:101723400-101732800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:101723600-101732800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:101723800-101732400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:101723800-101735600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:101723800-101736800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:101723800-101740200	Weak transcription	HepG2	liver
30	chr7:101724000-101735400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:101724400-101727800	Weak transcription	Brain Angular Gyrus	brain
33	chr7:101724400-101728600	Weak transcription	Fetal Lung	lung
34	chr7:101724400-101732600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:101724400-101740000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr7:101724600-101728000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:101724600-101728200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:101724600-101730400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:101724600-101732400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:101725200-101728000	ZNF genes & repeats	Fetal Intestine Small	intestine
41	chr7:101725400-101728400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:101725400-101732800	Weak transcription	Lung	lung
43	chr7:101725400-101738800	Weak transcription	Fetal Thymus	thymus
44	chr7:101725400-101740400	Weak transcription	Left Ventricle	heart
45	chr7:101725600-101728600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:101725600-101732800	Weak transcription	Ovary	ovary
47	chr7:101725600-101732800	Weak transcription	Spleen	Spleen
48	chr7:101725600-101736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:101725600-101740800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:101725600-101741000	Weak transcription	Right Ventricle	heart

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