Variant report

Variant	rs73186022
Chromosome Location	chr7:104875311-104875312
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104874376..104876423-chr7:104885886..104887727,2	K562	blood:
2	chr7:104873668..104875334-chr7:104875685..104877257,2	MCF-7	breast:
3	chr7:104867894..104871932-chr7:104875141..104878987,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56384866	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60919814	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73186102	0.81[EUR][1000 genomes]
rs9641349	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104851600-104878600	Weak transcription	Right Ventricle	heart
2	chr7:104859000-104878600	Weak transcription	Gastric	stomach
3	chr7:104860200-104877200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:104863600-104878400	Weak transcription	Aorta	Aorta
5	chr7:104863800-104877000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:104863800-104878600	Weak transcription	Pancreas	Pancrea
7	chr7:104864200-104878400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:104865600-104878600	Weak transcription	Left Ventricle	heart
9	chr7:104866000-104876400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:104866000-104877400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:104866000-104878600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:104866400-104876200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:104866400-104876200	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:104866400-104876400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:104866400-104879400	Weak transcription	NHLF	lung
16	chr7:104866400-104881000	Weak transcription	GM12878-XiMat	blood
17	chr7:104866400-104881600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:104866400-104887200	Weak transcription	Small Intestine	intestine
19	chr7:104866600-104878800	Weak transcription	A549	lung
20	chr7:104866600-104881200	Weak transcription	NHDF-Ad	bronchial
21	chr7:104868200-104878600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:104868400-104885400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:104869200-104892000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:104869400-104880000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:104869400-104885000	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:104869400-104885000	Weak transcription	Lung	lung
27	chr7:104869400-104885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:104869400-104885600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:104869600-104876800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:104869600-104878000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:104869600-104878200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:104869600-104878600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:104869600-104885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:104869600-104885000	Weak transcription	Fetal Intestine Small	intestine
35	chr7:104869600-104885000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:104869600-104885000	Weak transcription	Fetal Stomach	stomach
37	chr7:104869600-104886400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:104869600-104909200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:104870800-104877400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr7:104870800-104889400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:104871000-104876600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:104871000-104877000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:104871000-104877400	Weak transcription	Brain Anterior Caudate	brain
44	chr7:104871000-104877400	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:104871000-104877800	Weak transcription	Brain Substantia Nigra	brain
46	chr7:104871000-104878600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:104871000-104885600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:104871000-104885800	Weak transcription	HSMMtube	muscle
49	chr7:104871200-104877000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:104871200-104885600	Weak transcription	HSMM	muscle

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