Variant report

Variant	rs73187852
Chromosome Location	chr7:101878336-101878337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101873898..101875404-chr7:101876644..101879254,2	K562	blood:
2	chr7:101582943..101584775-chr7:101877100..101879982,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12539258	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17498402	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268030	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55752209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56076326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56078398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56293444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56377525	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62484935	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73187849	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73187850	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73187854	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9690066	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
3	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101852800-101897000	Weak transcription	NHEK	skin
5	chr7:101854400-101879800	Weak transcription	Brain Substantia Nigra	brain
6	chr7:101854400-101894800	Weak transcription	K562	blood
7	chr7:101854600-101879600	Strong transcription	Fetal Intestine Small	intestine
8	chr7:101857200-101883400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
10	chr7:101858800-101879000	Weak transcription	Right Atrium	heart
11	chr7:101860200-101883600	Weak transcription	Fetal Kidney	kidney
12	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:101865200-101880000	Strong transcription	Fetal Stomach	stomach
14	chr7:101865400-101884600	Weak transcription	HUVEC	blood vessel
15	chr7:101865600-101880200	Weak transcription	Fetal Brain Male	brain
16	chr7:101866000-101892600	Weak transcription	Osteobl	bone
17	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:101866800-101907600	Weak transcription	NH-A	brain
19	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:101867800-101879600	Strong transcription	Stomach Smooth Muscle	stomach
22	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:101869000-101879600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr7:101869600-101887800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
27	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr7:101870400-101878600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:101870600-101878600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr7:101870600-101879400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr7:101870600-101879600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:101870600-101881200	Strong transcription	Lung	lung
34	chr7:101870800-101878600	Strong transcription	Primary T cells from cord blood	blood
35	chr7:101870800-101878800	Strong transcription	Placenta	Placenta
36	chr7:101871000-101878800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:101871200-101884600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:101871800-101882600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
41	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:101872600-101882000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:101872600-101882600	Weak transcription	Colonic Mucosa	Colon
44	chr7:101872600-101882600	Weak transcription	NHLF	lung
45	chr7:101872600-101884400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:101872600-101886800	Strong transcription	Thymus	Thymus
47	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:101872800-101878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:101872800-101882600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine

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