Variant report

Variant	rs73189192
Chromosome Location	chr8:9910639-9910640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11780122	1.00[ASN][1000 genomes]
rs11786541	1.00[ASN][1000 genomes]
rs12678938	1.00[ASN][1000 genomes]
rs13250399	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252276	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272731	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276420	1.00[ASN][1000 genomes]
rs13282752	1.00[ASN][1000 genomes]
rs1521198	1.00[ASN][1000 genomes]
rs17150816	1.00[ASN][1000 genomes]
rs1976071	1.00[ASN][1000 genomes]
rs34376851	1.00[ASN][1000 genomes]
rs35013996	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35114037	1.00[ASN][1000 genomes]
rs35437983	1.00[ASN][1000 genomes]
rs4526366	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279061	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56408109	1.00[ASN][1000 genomes]
rs6601404	1.00[ASN][1000 genomes]
rs66536005	1.00[ASN][1000 genomes]
rs73189109	1.00[ASN][1000 genomes]
rs73189202	1.00[ASN][1000 genomes]
rs7831285	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv869934	chr8:9806639-9940586	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv890343	chr8:9888729-9932797	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv971581	chr8:9910302-9911256	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9902600-9911000	Weak transcription	Gastric	stomach
2	chr8:9905600-9910800	Weak transcription	HepG2	liver
3	chr8:9905800-9911000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:9906200-9911200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:9906400-9910800	Weak transcription	Fetal Brain Female	brain
6	chr8:9906400-9911000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:9906600-9911000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:9907000-9911200	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:9907600-9911000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:9907800-9911000	Weak transcription	Fetal Intestine Large	intestine
11	chr8:9908600-9910800	Weak transcription	Fetal Intestine Small	intestine
12	chr8:9909000-9911200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:9909400-9910800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:9909400-9910800	Weak transcription	Hela-S3	cervix
15	chr8:9909600-9910800	Weak transcription	Brain Angular Gyrus	brain
16	chr8:9909800-9910800	Weak transcription	Fetal Heart	heart
17	chr8:9909800-9911000	Enhancers	Fetal Brain Male	brain
18	chr8:9910600-9910800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:9910600-9910800	Enhancers	Liver	Liver
20	chr8:9910600-9911000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:9910600-9911000	Enhancers	Brain Germinal Matrix	brain

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