Variant report

Variant	rs73190179
Chromosome Location	chr7:105162812-105162813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:105162455-105162885	GM12892	blood:	n/a	n/a
2	MAX	chr7:105161571-105163152	MCF-7	breast:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
3	CTCF	chr7:105162680-105162830	GM12878	blood:	n/a	n/a
4	POLR2A	chr7:105161849-105163090	K562	blood:	n/a	n/a
5	POLR2A	chr7:105162755-105162949	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr7:105161835-105163068	GM15510	blood:	n/a	n/a
7	SP1	chr7:105162424-105163300	K562	blood:	n/a	chr7:105162730-105162740 chr7:105162730-105162739 chr7:105162729-105162741 chr7:105162729-105162741 chr7:105162756-105162767 chr7:105162720-105162729
8	MAX	chr7:105161414-105163312	A549	lung:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
9	POLR2A	chr7:105161729-105163141	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr7:105161829-105163041	GM19193	blood:	n/a	n/a
11	CTCF	chr7:105162478-105163042	K562	blood:	n/a	n/a
12	POLR2A	chr7:105161871-105163009	A549	lung:	n/a	n/a
13	EGR1	chr7:105162460-105163007	H1-hESC	embryonic stem cell:	n/a	chr7:105162509-105162519 chr7:105162512-105162521 chr7:105162726-105162740 chr7:105162514-105162524 chr7:105162669-105162679 chr7:105162756-105162770 chr7:105162482-105162492
14	POLR2A	chr7:105162446-105162985	GM12891	blood:	n/a	n/a
15	USF1	chr7:105162439-105162935	ECC-1	luminal epithelium:	n/a	n/a
16	MAX	chr7:105161771-105163143	K562	blood:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
17	POLR2A	chr7:105161828-105163067	MCF10A-Er-Src	breast:	n/a	n/a
18	REST	chr7:105162241-105162921	SK-N-SH	brain:	n/a	chr7:105162256-105162266 chr7:105162263-105162273 chr7:105162251-105162264
19	YY1	chr7:105161788-105163025	SK-N-SH_RA	brain:	n/a	chr7:105162474-105162483 chr7:105162468-105162479 chr7:105162331-105162353 chr7:105162599-105162613 chr7:105162348-105162362 chr7:105162270-105162284 chr7:105162472-105162483 chr7:105162505-105162519 chr7:105162704-105162713
20	E2F6	chr7:105161693-105162915	K562	blood:	n/a	chr7:105162625-105162640 chr7:105162061-105162071 chr7:105162514-105162523 chr7:105162277-105162287
21	CTCF	chr7:105162760-105162910	SK-N-SH_RA	brain:	n/a	n/a
22	FOXP2	chr7:105162551-105162981	SK-N-MC	brain:	n/a	n/a
23	NR2F2	chr7:105161520-105163352	K562	blood:	n/a	n/a
24	MAZ	chr7:105161612-105163252	K562	blood:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044
25	EGR1	chr7:105162353-105162998	K562	blood:	n/a	chr7:105162509-105162519 chr7:105162512-105162521 chr7:105162726-105162740 chr7:105162514-105162524 chr7:105162669-105162679 chr7:105162756-105162770 chr7:105162482-105162492
26	YY1	chr7:105161768-105162874	ECC-1	luminal epithelium:	n/a	chr7:105162474-105162483 chr7:105162468-105162479 chr7:105162331-105162353 chr7:105162599-105162613 chr7:105162348-105162362 chr7:105162270-105162284 chr7:105162472-105162483 chr7:105162505-105162519 chr7:105162704-105162713
27	E2F4	chr7:105161831-105162895	K562	blood:	n/a	chr7:105162625-105162640 chr7:105162061-105162071 chr7:105162514-105162523 chr7:105162277-105162287
28	CCNT2	chr7:105161929-105162925	K562	blood:	n/a	n/a
29	CTCF	chr7:105162760-105162910	HCPEpiC	choroid plexus:	n/a	n/a
30	MXI1	chr7:105161065-105163516	SK-N-SH	brain:	n/a	n/a
31	CTCF	chr7:105162807-105162873	A549	lung:	n/a	n/a
32	POLR2A	chr7:105161875-105163064	GM12892	blood:	n/a	n/a
33	E2F4	chr7:105162301-105163043	MCF10A-Er-Src	breast:	n/a	chr7:105162625-105162640 chr7:105162514-105162523
34	POLR2A	chr7:105162212-105163112	HepG2	liver:	n/a	n/a
35	TCF7L2	chr7:105162575-105162944	Hela-S3	cervix:	n/a	n/a
36	CTCFL	chr7:105162298-105162900	K562	blood:	n/a	n/a
37	SETDB1	chr7:105161631-105162977	K562	blood:	n/a	chr7:105162512-105162521
38	POU2F2	chr7:105162743-105162941	GM12878	blood:	n/a	n/a
39	HA-E2F1	chr7:105161816-105162989	Hela-S3	cervix:	n/a	chr7:105162625-105162640 chr7:105162061-105162071 chr7:105162514-105162523 chr7:105162277-105162287
40	RAD21	chr7:105162806-105162843	H1-hESC	embryonic stem cell:	n/a	n/a
41	RCOR1	chr7:105161920-105163085	Hela-S3	cervix:	n/a	n/a
42	STAT5A	chr7:105162381-105163069	GM12878	blood:	n/a	chr7:105162925-105162932
43	CTCF	chr7:105162779-105162893	GM19238	blood:	n/a	n/a
44	POLR2A	chr7:105162264-105163088	GM12878	blood:	n/a	n/a
45	REST	chr7:105161706-105163253	H1-neurons	neurons:	n/a	chr7:105162256-105162266 chr7:105162184-105162193 chr7:105162263-105162273 chr7:105161851-105161864 chr7:105162251-105162264
46	POLR2A	chr7:105162484-105162943	GM12891	blood:	n/a	n/a
47	TAF1	chr7:105161842-105163045	PFSK-1	brain:	n/a	n/a
48	CTCF	chr7:105162700-105162850	HUVEC	blood vessel:	n/a	n/a
49	POLR2A	chr7:105161877-105162925	HUVEC	blood vessel:	n/a	n/a
50	HEY1	chr7:105161730-105163007	HepG2	liver:	n/a	chr7:105162509-105162524 chr7:105162180-105162195 chr7:105162467-105162482 chr7:105162242-105162257

No.	Distal block	Cell Line	Cell type
1	chr7:104653151..104655503-chr7:105160083..105164345,7	K562	blood:
2	chr1:156698268..156698938-chr7:105162358..105162859,2	Hela-S3	cervix:
3	chr7:105160261..105165362-chr7:105168599..105174293,22	MCF-7	breast:
4	chr19:55628556..55629065-chr7:105162615..105163265,2	Hela-S3	cervix:
5	chr7:65958424..65959012-chr7:105162357..105162865,2	NB4	blood:
6	chr7:105160711..105163604-chr7:105655467..105658687,3	K562	blood:
7	chr7:105162077..105162858-chr7:105172193..105173344,3	MCF-7	breast:
8	chr6:96969151..96969942-chr7:105161938..105162970,3	Hela-S3	cervix:
9	chr7:105162459..105163197-chr7:105172183..105173025,3	MCF-7	breast:
10	chr7:105158727..105165017-chr7:105166972..105176993,56	K562	blood:
11	chr7:105159598..105163989-chr7:105219696..105223115,7	MCF-7	breast:
12	chr7:105162283..105162894-chr7:105172462..105173034,2	NB4	blood:
13	chr7:105161082..105163079-chr7:105240360..105242686,2	K562	blood:
14	chr7:104652163..104655972-chr7:105160292..105163807,4	MCF-7	breast:
15	chr7:105160687..105164718-chr7:105170642..105174239,14	MCF-7	breast:
16	chr17:56708735..56709467-chr7:105162240..105162879,2	MCF-7	breast:
17	chr7:105162231..105163027-chr7:105172004..105172750,2	K562	blood:
18	chr7:104653054..104655993-chr7:105161169..105164095,3	MCF-7	breast:
19	chr7:104653151..104655346-chr7:105160083..105164134,5	K562	blood:
20	chr7:105026529..105029377-chr7:105162488..105165118,2	MCF-7	breast:
21	chr7:105148472..105150405-chr7:105160556..105162918,2	MCF-7	breast:
22	chr7:105027746..105030082-chr7:105160759..105163665,5	MCF-7	breast:
23	chr17:41465807..41466363-chr7:105162224..105162878,2	NB4	blood:

Variant related genes	Relation type
PUS7	TF binding region
ENSG00000233797	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000237310	Chromatin interaction
ENSG00000135250	Chromatin interaction
ENSG00000014123	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000223473	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000143319	Chromatin interaction
ENSG00000125503	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000185055	Chromatin interaction
ENSG00000128536	Chromatin interaction
ENSG00000223886	Chromatin interaction
ENSG00000135249	Chromatin interaction
ENSG00000143303	Chromatin interaction
ENSG00000091127	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11556986	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355614	0.92[EUR][1000 genomes]
rs1569134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1706908	0.92[EUR][1000 genomes]
rs1721498	0.89[EUR][1000 genomes]
rs1721500	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17343556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976969	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2392749	0.91[EUR][1000 genomes]
rs3892297	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3892298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074939	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083246	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691539	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55700120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701318	1.00[ASN][1000 genomes]
rs55740553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55794529	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825845	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55906043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55922564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967123	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55983796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56055535	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56144672	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56165465	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56177071	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56230603	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56239334	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56251768	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268110	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56379434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57492756	1.00[ASN][1000 genomes]
rs58194204	1.00[ASN][1000 genomes]
rs68153235	0.91[EUR][1000 genomes]
rs6943132	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944787	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953851	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955796	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956249	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957424	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961863	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973263	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973974	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977748	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs711430	0.92[EUR][1000 genomes]
rs711431	0.88[EUR][1000 genomes]
rs73190133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190172	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190174	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190175	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190178	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190184	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190186	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190187	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190189	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190200	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190201	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73190202	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192107	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192115	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192120	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192125	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192134	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192141	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192143	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192144	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192145	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192149	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192150	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192151	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192153	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777343	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs818619	0.92[EUR][1000 genomes]
rs818620	0.92[EUR][1000 genomes]
rs818621	0.92[EUR][1000 genomes]
rs818628	0.84[EUR][1000 genomes]
rs9769403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1022065	chr7:104997315-105190662	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv888929	chr7:105012975-105163091	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv888930	chr7:105012975-105170476	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv888931	chr7:105012975-105173974	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv888932	chr7:105012975-105179756	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv888933	chr7:105012975-105193051	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv1023564	chr7:105018484-105182998	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
14	nsv464668	chr7:105088693-105208492	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv608069	chr7:105088693-105208492	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv888935	chr7:105110990-105193051	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	nsv888936	chr7:105119308-105193051	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
18	esv1793037	chr7:105137305-105167132	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
19	nsv8197	chr7:105160920-105166965	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105161200-105163000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr7:105161200-105163000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:105161200-105163000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr7:105161200-105163000	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr7:105161200-105163000	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr7:105161200-105163200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr7:105161200-105163400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:105161200-105163400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:105161200-105163400	Active TSS	Brain Germinal Matrix	brain
10	chr7:105161200-105163400	Active TSS	A549	lung
11	chr7:105161400-105163000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:105161400-105163000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:105161400-105163000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:105161400-105163200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:105161400-105163200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:105161400-105163200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:105161400-105163200	Active TSS	Fetal Brain Male	brain
18	chr7:105161400-105163400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:105161400-105163400	Active TSS	Fetal Kidney	kidney
20	chr7:105161600-105163000	Active TSS	Colonic Mucosa	Colon
21	chr7:105161600-105163000	Active TSS	Lung	lung
22	chr7:105161600-105163000	Active TSS	Psoas Muscle	Psoas
23	chr7:105161600-105163000	Active TSS	Rectal Smooth Muscle	rectum
24	chr7:105161600-105163200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:105161600-105163200	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr7:105161600-105163200	Active TSS	Aorta	Aorta
27	chr7:105161600-105163400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:105161600-105163400	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr7:105161600-105163400	Active TSS	NHDF-Ad	bronchial
30	chr7:105161800-105163000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr7:105161800-105163000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:105161800-105163000	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr7:105161800-105163000	Active TSS	Muscle Satellite Cultured Cells	--
34	chr7:105161800-105163000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:105161800-105163000	Active TSS	Brain Angular Gyrus	brain
36	chr7:105161800-105163000	Active TSS	Fetal Heart	heart
37	chr7:105161800-105163200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr7:105161800-105163200	Active TSS	Brain Hippocampus Middle	brain
39	chr7:105161800-105163400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:105162000-105163000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr7:105162000-105163000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:105162000-105163000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:105162000-105163000	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr7:105162000-105163000	Active TSS	Brain Substantia Nigra	brain
45	chr7:105162000-105163000	Active TSS	Colon Smooth Muscle	Colon
46	chr7:105162000-105163000	Active TSS	Esophagus	oesophagus
47	chr7:105162000-105163000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr7:105162000-105163000	Active TSS	Fetal Intestine Large	intestine
49	chr7:105162000-105163000	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr7:105162000-105163000	Transcr. at gene 5' and 3'	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links