Variant report

Variant	rs73192025
Chromosome Location	chr7:102591489-102591490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102589644..102592537-chr7:102602943..102605917,2	K562	blood:
2	chr7:102583146..102586073-chr7:102591265..102594000,2	K562	blood:
3	chr7:102583035..102585728-chr7:102590103..102592728,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12113233	1.00[ASN][1000 genomes]
rs12113759	0.83[ASN][1000 genomes]
rs17135913	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17135916	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2228687	0.90[EUR][1000 genomes]
rs2411061	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4610658	1.00[ASN][1000 genomes]
rs55681588	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55781834	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55825804	0.83[ASN][1000 genomes]
rs55849741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55851590	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146438	1.00[ASN][1000 genomes]
rs56186316	1.00[ASN][1000 genomes]
rs56314487	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56336567	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56692051	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6465886	0.87[EUR][1000 genomes]
rs66712128	0.90[EUR][1000 genomes]
rs6955064	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6964296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6968036	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73192019	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73192026	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714541	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7779854	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7790451	1.00[ASN][1000 genomes]
rs7797873	1.00[ASN][1000 genomes]
rs7798582	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73192025	LRRC17	cis	Stomach	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102574000-102592200	Weak transcription	Fetal Intestine Large	intestine
2	chr7:102574600-102594400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:102590200-102594000	Strong transcription	K562	blood
4	chr7:102591000-102592800	Weak transcription	Fetal Lung	lung
5	chr7:102591000-102619400	Weak transcription	HSMM	muscle

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