Variant report

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11618509	0.82[EUR][1000 genomes]
rs11618720	0.83[ASN][1000 genomes]
rs11618738	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1323112	0.82[EUR][1000 genomes]
rs1555559	0.82[EUR][1000 genomes]
rs1578872	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7327967	0.82[EUR][1000 genomes]
rs9316600	0.81[EUR][1000 genomes]
rs9316602	0.82[EUR][1000 genomes]
rs9316603	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9527046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568783	0.81[EUR][1000 genomes]
rs9568784	0.82[EUR][1000 genomes]
rs9568785	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568787	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs986338	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53580600-53589000	Weak transcription	Fetal Muscle Leg	muscle
2	chr13:53581800-53587800	Enhancers	Duodenum Mucosa	Duodenum
3	chr13:53582600-53586600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr13:53583000-53590200	Weak transcription	Primary B cells from cord blood	blood
5	chr13:53583200-53585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:53584200-53586400	Enhancers	Pancreas	Pancrea
7	chr13:53584400-53585000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:53584400-53585000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr13:53584400-53585000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:53584400-53585000	Enhancers	HMEC	breast
11	chr13:53584400-53585200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:53584400-53587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:53584600-53585000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:53584600-53585000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr13:53584600-53585000	Enhancers	NHEK	skin
16	chr13:53584600-53589000	Weak transcription	Stomach Mucosa	stomach
17	chr13:53584800-53585800	Weak transcription	Small Intestine	intestine
18	chr13:53584800-53586200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr13:53584800-53587600	Weak transcription	Gastric	stomach
20	chr13:53584800-53589000	Weak transcription	Esophagus	oesophagus

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