Variant report

Variant	rs7319426
Chromosome Location	chr13:63795949-63795950
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11840604	1.00[AMR][1000 genomes]
rs11843334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55787756	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56275791	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57407246	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57881052	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59721850	0.81[AFR][1000 genomes]
rs59921031	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61612522	1.00[AMR][1000 genomes]
rs7323565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7330846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505760	0.85[AFR][1000 genomes]
rs73505792	1.00[AMR][1000 genomes]
rs73505797	1.00[AMR][1000 genomes]
rs73507803	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73507823	1.00[AMR][1000 genomes]
rs73507861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753514	chr13:63221699-63959299	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900274	chr13:63511841-63864603	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900275	chr13:63511841-63865669	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039454	chr13:63545468-63826462	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv541798	chr13:63545468-63826462	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1045647	chr13:63545468-64082080	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv541799	chr13:63545468-64082080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900277	chr13:63666149-63892905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1052016	chr13:63704346-63826462	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv541800	chr13:63704346-63826462	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1040676	chr13:63778306-63837254	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv469654	chr13:63783762-63946116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv482280	chr13:63783762-63946116	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv561901	chr13:63784286-63972811	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63794000-63796600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:63794800-63796000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:63794800-63796600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:63794800-63796600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:63795000-63796600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:63795000-63796600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:63795000-63796600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:63795600-63796000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr13:63795800-63796400	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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