Variant report

Variant	rs73194369
Chromosome Location	chr12:87627893-87627894
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:87626896..87628640-chr12:87630760..87632363,2	MCF-7	breast:

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10858556	0.95[EUR][1000 genomes]
rs11104241	0.95[EUR][1000 genomes]
rs11104353	1.00[EUR][1000 genomes]
rs11608450	0.95[EUR][1000 genomes]
rs11608474	0.95[EUR][1000 genomes]
rs11609545	0.95[EUR][1000 genomes]
rs11609577	0.95[EUR][1000 genomes]
rs11609959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610000	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11610202	0.95[EUR][1000 genomes]
rs11610240	0.95[EUR][1000 genomes]
rs11610610	0.95[EUR][1000 genomes]
rs11611298	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11612996	0.95[EUR][1000 genomes]
rs11613608	0.95[EUR][1000 genomes]
rs11614902	0.95[EUR][1000 genomes]
rs11615280	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11615328	0.95[EUR][1000 genomes]
rs11615381	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12099694	0.95[EUR][1000 genomes]
rs12099773	0.95[EUR][1000 genomes]
rs12099774	0.95[EUR][1000 genomes]
rs12301215	0.95[EUR][1000 genomes]
rs17014343	0.95[EUR][1000 genomes]
rs17014345	0.95[EUR][1000 genomes]
rs17014347	0.95[EUR][1000 genomes]
rs17014352	0.95[EUR][1000 genomes]
rs17014355	0.95[EUR][1000 genomes]
rs17014357	0.95[EUR][1000 genomes]
rs17014359	0.95[EUR][1000 genomes]
rs17014361	0.95[EUR][1000 genomes]
rs17014363	0.95[EUR][1000 genomes]
rs17014366	0.95[EUR][1000 genomes]
rs17014369	0.95[EUR][1000 genomes]
rs17014430	0.95[EUR][1000 genomes]
rs55676823	0.95[EUR][1000 genomes]
rs55742281	0.85[EUR][1000 genomes]
rs55844216	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56212508	0.85[EUR][1000 genomes]
rs56350179	0.95[EUR][1000 genomes]
rs60530487	0.95[EUR][1000 genomes]
rs60718562	0.95[EUR][1000 genomes]
rs66489945	1.00[EUR][1000 genomes]
rs66520580	1.00[EUR][1000 genomes]
rs66543122	0.95[EUR][1000 genomes]
rs66569903	0.95[EUR][1000 genomes]
rs66589206	0.95[EUR][1000 genomes]
rs66606466	0.95[EUR][1000 genomes]
rs66721237	0.95[EUR][1000 genomes]
rs66721487	1.00[EUR][1000 genomes]
rs66739429	0.95[EUR][1000 genomes]
rs66761801	0.95[EUR][1000 genomes]
rs66796553	0.95[EUR][1000 genomes]
rs66881017	0.95[EUR][1000 genomes]
rs66920061	0.95[EUR][1000 genomes]
rs66935924	0.95[EUR][1000 genomes]
rs66952248	0.95[EUR][1000 genomes]
rs66983270	0.95[EUR][1000 genomes]
rs66995551	0.95[EUR][1000 genomes]
rs67126124	0.95[EUR][1000 genomes]
rs67136611	0.95[EUR][1000 genomes]
rs67152262	0.95[EUR][1000 genomes]
rs67261476	0.95[EUR][1000 genomes]
rs67311221	0.95[EUR][1000 genomes]
rs67407309	0.95[EUR][1000 genomes]
rs67429282	0.95[EUR][1000 genomes]
rs67448624	0.95[EUR][1000 genomes]
rs67535999	0.95[EUR][1000 genomes]
rs67639118	0.95[EUR][1000 genomes]
rs67642342	0.95[EUR][1000 genomes]
rs67651962	1.00[EUR][1000 genomes]
rs67687334	0.95[EUR][1000 genomes]
rs67735893	0.95[EUR][1000 genomes]
rs67751006	0.95[EUR][1000 genomes]
rs67755243	0.95[EUR][1000 genomes]
rs67768352	0.95[EUR][1000 genomes]
rs67964737	1.00[EUR][1000 genomes]
rs67980276	0.95[EUR][1000 genomes]
rs67982985	0.95[EUR][1000 genomes]
rs68008015	0.95[EUR][1000 genomes]
rs68009363	0.95[EUR][1000 genomes]
rs68030146	0.95[EUR][1000 genomes]
rs68133325	0.95[EUR][1000 genomes]
rs68145579	0.86[EUR][1000 genomes]
rs68166481	0.91[EUR][1000 genomes]
rs71078956	0.95[EUR][1000 genomes]
rs7305593	0.95[EUR][1000 genomes]
rs73175495	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175498	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73175502	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177627	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177634	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177637	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73177701	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179835	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179837	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179847	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73179849	0.95[EUR][1000 genomes]
rs73179855	0.95[EUR][1000 genomes]
rs73179857	0.86[EUR][1000 genomes]
rs73181416	0.95[EUR][1000 genomes]
rs73181421	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181428	0.95[EUR][1000 genomes]
rs73181432	0.95[EUR][1000 genomes]
rs73181435	0.95[EUR][1000 genomes]
rs73181437	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181441	0.86[EUR][1000 genomes]
rs73194307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197878	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73197888	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73197891	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73197895	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73199707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73199710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87625800-87628600	Weak transcription	HMEC	breast
2	chr12:87626400-87629200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:87627200-87628200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links