Variant report

Variant	rs73196885
Chromosome Location	chr8:10864318-10864319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10861649..10864572-chr8:10871901..10875246,3	K562	blood:
2	chr8:10864237..10865901-chr8:10868526..10870693,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10091913	0.94[EUR][1000 genomes]
rs10107384	0.93[EUR][1000 genomes]
rs10111751	0.87[ASN][1000 genomes]
rs10216472	0.92[EUR][1000 genomes]
rs10217059	0.92[EUR][1000 genomes]
rs11250108	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11250110	1.00[ASN][1000 genomes]
rs11779199	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784312	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785788	0.87[ASN][1000 genomes]
rs11988372	0.96[EUR][1000 genomes]
rs11995682	0.96[EUR][1000 genomes]
rs12216757	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12216784	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12216875	0.96[EUR][1000 genomes]
rs35083028	1.00[ASN][1000 genomes]
rs3923921	0.87[ASN][1000 genomes]
rs4074356	1.00[ASN][1000 genomes]
rs4074822	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4076425	1.00[ASN][1000 genomes]
rs4320511	0.93[EUR][1000 genomes]
rs4370496	1.00[ASN][1000 genomes]
rs4386942	1.00[ASN][1000 genomes]
rs4507728	0.93[EUR][1000 genomes]
rs4840531	0.87[ASN][1000 genomes]
rs4841469	0.81[EUR][1000 genomes]
rs4841471	0.94[EUR][1000 genomes]
rs4841472	0.96[EUR][1000 genomes]
rs4841473	0.87[ASN][1000 genomes]
rs4841474	0.93[EUR][1000 genomes]
rs4841475	0.96[EUR][1000 genomes]
rs4841476	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841477	0.86[EUR][1000 genomes]
rs4841478	0.88[EUR][1000 genomes]
rs4841479	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56011306	1.00[ASN][1000 genomes]
rs56052312	0.88[EUR][1000 genomes]
rs56112120	0.87[ASN][1000 genomes]
rs56278516	0.82[EUR][1000 genomes]
rs56319439	0.82[EUR][1000 genomes]
rs59446076	0.87[ASN][1000 genomes]
rs61427182	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601546	0.94[EUR][1000 genomes]
rs67113145	1.00[ASN][1000 genomes]
rs6990395	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001599	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7016361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73196884	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73196888	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7350066	0.87[ASN][1000 genomes]
rs7350072	0.87[ASN][1000 genomes]
rs7350074	1.00[ASN][1000 genomes]
rs7813323	0.87[ASN][1000 genomes]
rs7820231	0.87[ASN][1000 genomes]
rs7822400	1.00[ASN][1000 genomes]
rs7824797	0.93[EUR][1000 genomes]
rs7826561	0.93[EUR][1000 genomes]
rs7833832	0.96[EUR][1000 genomes]
rs7836687	0.94[EUR][1000 genomes]
rs7836720	0.93[EUR][1000 genomes]
rs7837828	0.93[EUR][1000 genomes]
rs7838833	0.96[EUR][1000 genomes]
rs7842214	0.87[ASN][1000 genomes]
rs9329232	0.96[EUR][1000 genomes]
rs9657542	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10856200-10864800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:10859400-10865200	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain
4	chr8:10859800-10864800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:10860000-10864800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:10860000-10864800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:10860000-10865000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:10860000-10865000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:10860000-10865000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:10860200-10864800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:10860200-10865000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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