Variant report

Variant	rs73201961
Chromosome Location	chr12:116830960-116830961
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:116825784..116832758-chr12:116857439..116867276,23	MCF-7	breast:
2	chr12:116709711..116721513-chr12:116822251..116832160,67	MCF-7	breast:
3	chr12:116829449..116831234-chr12:116879292..116881768,2	MCF-7	breast:
4	chr12:116826897..116832091-chr12:116928924..116934069,7	MCF-7	breast:
5	chr12:116827133..116831140-chr12:116860978..116865806,7	MCF-7	breast:
6	chr12:116827340..116830993-chr12:116850085..116852933,3	MCF-7	breast:
7	chr12:116703341..116705870-chr12:116828497..116831300,3	MCF-7	breast:
8	chr12:116827509..116831346-chr12:116927217..116929854,4	MCF-7	breast:
9	chr12:116830917..116832418-chr12:116843238..116846020,2	MCF-7	breast:
10	chr12:116828717..116832801-chr12:116838691..116842594,4	MCF-7	breast:
11	chr12:116829074..116831886-chr12:116942916..116944906,2	MCF-7	breast:
12	chr12:116826294..116831312-chr12:116930135..116935656,18	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55668932	0.88[ASN][1000 genomes]
rs56208649	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs60047044	0.88[ASN][1000 genomes]
rs60109929	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73201956	0.87[EUR][1000 genomes]
rs73204026	0.99[ASN][1000 genomes]
rs73204034	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73204040	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73204041	0.88[ASN][1000 genomes]
rs73204046	0.88[ASN][1000 genomes]
rs73204048	0.88[ASN][1000 genomes]
rs73204049	0.88[ASN][1000 genomes]
rs73204053	0.81[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116827600-116831200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:116829200-116832400	Enhancers	Fetal Thymus	thymus
3	chr12:116829800-116832000	Weak transcription	Gastric	stomach
4	chr12:116830000-116831000	Weak transcription	HSMMtube	muscle
5	chr12:116830000-116831600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:116830000-116832200	Enhancers	A549	lung
7	chr12:116830200-116835000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:116830200-116843800	Weak transcription	NHLF	lung
9	chr12:116830400-116833000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:116830400-116834800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:116830400-116834800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:116830400-116836000	Weak transcription	NHDF-Ad	bronchial
13	chr12:116830800-116831600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr12:116830800-116831600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:116830800-116831800	Enhancers	Primary hematopoietic stem cells	blood
16	chr12:116830800-116832200	Enhancers	Thymus	Thymus
17	chr12:116830800-116832400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr12:116830800-116833600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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