Variant report

Variant	rs73209921
Chromosome Location	chr8:10707724-10707725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10695954..10697810-chr8:10705274..10708188,2	K562	blood:
2	chr8:10707686..10708314-chr8:11136770..11137601,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258724	Chromatin interaction
ENSG00000254093	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10503409	0.91[EUR][1000 genomes]
rs10503410	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1106740	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11995539	0.83[EUR][1000 genomes]
rs11998382	0.83[EUR][1000 genomes]
rs12155811	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12375394	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12750	0.82[EUR][1000 genomes]
rs1549792	0.83[EUR][1000 genomes]
rs1549793	0.83[EUR][1000 genomes]
rs17711248	0.81[EUR][1000 genomes]
rs17712981	0.80[EUR][1000 genomes]
rs17718772	0.83[EUR][1000 genomes]
rs17720365	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17721089	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17774331	0.83[EUR][1000 genomes]
rs17774398	0.83[EUR][1000 genomes]
rs17774627	0.84[EUR][1000 genomes]
rs17776404	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17776427	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17776497	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17776622	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17776946	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2005310	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55637012	0.83[EUR][1000 genomes]
rs55848210	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56023918	0.83[EUR][1000 genomes]
rs56046029	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56109041	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56122299	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57348261	0.91[EUR][1000 genomes]
rs58193873	0.91[EUR][1000 genomes]
rs6984391	0.83[EUR][1000 genomes]
rs7002757	0.83[EUR][1000 genomes]
rs714370	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73200740	0.82[EUR][1000 genomes]
rs73200742	0.83[EUR][1000 genomes]
rs73208756	0.83[EUR][1000 genomes]
rs73208757	0.83[EUR][1000 genomes]
rs73208762	0.83[EUR][1000 genomes]
rs73208766	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73208769	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208773	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73208775	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208778	0.91[EUR][1000 genomes]
rs73208781	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208782	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73208785	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73208789	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208790	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208791	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208792	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208793	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208794	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73208795	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73209913	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73209918	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73209922	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7817252	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7817654	0.81[EUR][1000 genomes]
rs7826036	0.83[EUR][1000 genomes]
rs7827063	0.83[EUR][1000 genomes]
rs7845731	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs891558	0.82[EUR][1000 genomes]
rs891559	0.82[EUR][1000 genomes]
rs9650659	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10698000-10707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:10707600-10707800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:10707600-10707800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:10707600-10707800	Enhancers	HMEC	breast
5	chr8:10707600-10708200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr8:10707600-10711600	Bivalent Enhancer	Fetal Brain Male	brain

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