Variant report

Variant	rs73209946
Chromosome Location	chr8:10744390-10744391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11997941	1.00[ASN][1000 genomes]
rs12546540	1.00[ASN][1000 genomes]
rs13275368	1.00[ASN][1000 genomes]
rs1835492	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2033368	1.00[ASN][1000 genomes]
rs2409652	1.00[ASN][1000 genomes]
rs2409653	1.00[ASN][1000 genomes]
rs2409654	1.00[ASN][1000 genomes]
rs2409655	1.00[ASN][1000 genomes]
rs2409656	1.00[ASN][1000 genomes]
rs2409666	1.00[ASN][1000 genomes]
rs2898244	1.00[ASN][1000 genomes]
rs34535545	1.00[ASN][1000 genomes]
rs35873156	1.00[ASN][1000 genomes]
rs4310166	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60666967	1.00[ASN][1000 genomes]
rs61064518	1.00[ASN][1000 genomes]
rs6984171	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990041	1.00[ASN][1000 genomes]
rs6993753	1.00[ASN][1000 genomes]
rs73209953	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73209954	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73662638	1.00[ASN][1000 genomes]
rs73662640	1.00[ASN][1000 genomes]
rs73662642	1.00[ASN][1000 genomes]
rs73662643	1.00[ASN][1000 genomes]
rs753786	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10720800-10756200	Weak transcription	Pancreas	Pancrea
2	chr8:10737600-10745000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:10743800-10745200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr8:10743800-10750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:10744000-10744800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:10744000-10745200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr8:10744200-10744600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:10744200-10745200	Bivalent Enhancer	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links