Variant report

Variant	rs73209954
Chromosome Location	chr8:10760667-10760668
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10752690..10756437-chr8:10759799..10762876,3	K562	blood:
2	chr8:10760620..10764608-chr8:10766304..10768558,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11250089	1.00[ASN][1000 genomes]
rs11986744	1.00[ASN][1000 genomes]
rs11990229	1.00[ASN][1000 genomes]
rs13277664	1.00[ASN][1000 genomes]
rs13280573	1.00[ASN][1000 genomes]
rs17152329	1.00[ASN][1000 genomes]
rs17152399	1.00[ASN][1000 genomes]
rs1835492	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35545799	1.00[ASN][1000 genomes]
rs4310166	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980549	1.00[ASN][1000 genomes]
rs6981179	1.00[ASN][1000 genomes]
rs6984171	0.93[EUR][1000 genomes]
rs6987083	1.00[ASN][1000 genomes]
rs6989930	1.00[ASN][1000 genomes]
rs6993463	1.00[ASN][1000 genomes]
rs6993632	1.00[ASN][1000 genomes]
rs7001530	1.00[ASN][1000 genomes]
rs7010246	1.00[ASN][1000 genomes]
rs73209946	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73209953	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753786	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7822821	1.00[ASN][1000 genomes]
rs7824708	1.00[ASN][1000 genomes]
rs7840769	1.00[ASN][1000 genomes]
rs891557	1.00[ASN][1000 genomes]
rs9969476	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10753000-10763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:10754200-10762000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:10760000-10761600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links