Variant report

Variant	rs732132
Chromosome Location	chr2:56011881-56011882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56011760..56013459-chr2:56019994..56021877,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10496051	0.81[AMR][1000 genomes]
rs10496052	0.82[AMR][1000 genomes]
rs11125606	0.86[AMR][1000 genomes]
rs12464737	0.82[AMR][1000 genomes]
rs12478566	0.90[ASN][1000 genomes]
rs12615158	0.83[AMR][1000 genomes]
rs1344732	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1346781	0.81[ASN][1000 genomes]
rs1346783	0.83[ASN][1000 genomes]
rs1346790	0.80[ASN][1000 genomes]
rs1367225	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1367228	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1430189	0.85[ASN][1000 genomes]
rs1430190	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1430191	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1430203	0.83[ASN][1000 genomes]
rs17047234	0.82[AMR][1000 genomes]
rs17369648	0.85[AMR][1000 genomes]
rs1897114	0.80[ASN][1000 genomes]
rs1946545	0.82[AMR][1000 genomes]
rs1960050	0.85[ASN][1000 genomes]
rs1985160	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1985162	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1985163	0.81[AMR][1000 genomes]
rs2009262	0.87[AMR][1000 genomes]
rs2052933	0.85[ASN][1000 genomes]
rs2115876	0.86[ASN][1000 genomes]
rs2115878	0.86[ASN][1000 genomes]
rs3791676	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs4355154	0.86[ASN][1000 genomes]
rs4672074	0.83[ASN][1000 genomes]
rs58027672	0.85[AMR][1000 genomes]
rs59556444	0.86[AMR][1000 genomes]
rs62167713	0.83[AMR][1000 genomes]
rs6545523	0.80[ASN][1000 genomes]
rs6545526	0.83[ASN][1000 genomes]
rs6708796	0.86[ASN][1000 genomes]
rs6712017	0.85[ASN][1000 genomes]
rs6714513	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6724369	0.82[AMR][1000 genomes]
rs6733730	0.83[ASN][1000 genomes]
rs6749785	0.86[ASN][1000 genomes]
rs6751403	0.85[ASN][1000 genomes]
rs6753814	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6757057	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs72618677	0.87[ASN][1000 genomes]
rs7426380	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs7560657	0.82[AMR][1000 genomes]
rs7572523	0.86[ASN][1000 genomes]
rs7574127	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7609520	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv997683	chr2:55976574-56013875	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs732132	ASB3	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55989400-56015000	Weak transcription	Aorta	Aorta
2	chr2:56010200-56012800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:56010600-56013200	Weak transcription	A549	lung
4	chr2:56010600-56013800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:56010600-56013800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:56011600-56012800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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