Variant report

Variant	rs73219408
Chromosome Location	chr21:41163042-41163043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs16998635	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16998638	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16998655	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2837182	0.81[EUR][1000 genomes]
rs2837205	1.00[ASN][1000 genomes]
rs2837210	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837235	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2837238	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2837239	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2837240	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2837243	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2837244	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2837251	0.80[EUR][1000 genomes]
rs2837252	0.89[EUR][1000 genomes]
rs2837254	0.87[EUR][1000 genomes]
rs456334	0.95[ASN][1000 genomes]
rs456685	1.00[ASN][1000 genomes]
rs457024	1.00[ASN][1000 genomes]
rs461238	0.95[ASN][1000 genomes]
rs463119	0.95[ASN][1000 genomes]
rs463652	1.00[ASN][1000 genomes]
rs55655475	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55728093	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55760722	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55776043	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55781006	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55781625	1.00[ASN][1000 genomes]
rs55860353	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55861818	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55909108	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55909830	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55926748	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55928419	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56036187	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56115387	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56131077	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56225114	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56347307	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56366918	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56373284	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374307	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56389826	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57022486	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57347860	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57470272	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57759710	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57782102	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58091194	0.87[EUR][1000 genomes]
rs58188293	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59123531	0.89[EUR][1000 genomes]
rs60383387	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61422649	0.89[EUR][1000 genomes]
rs61549838	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6517572	0.89[EUR][1000 genomes]
rs66739666	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66804248	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66820219	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66920289	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66936107	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66957543	0.87[EUR][1000 genomes]
rs66958418	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66999256	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67044789	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67201726	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67229478	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67233221	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67499448	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67562015	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67633796	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67676396	0.86[EUR][1000 genomes]
rs67833859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67897619	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68016066	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68035842	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68101788	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68176580	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs720942	0.87[EUR][1000 genomes]
rs7278863	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7279032	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7281712	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7283816	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73219471	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73219473	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73219487	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73219495	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73221214	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221215	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221242	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221245	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73221246	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73221247	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221248	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221249	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221251	0.89[EUR][1000 genomes]
rs73221252	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73221256	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221260	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221261	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73221269	0.89[EUR][1000 genomes]
rs741864	0.89[EUR][1000 genomes]
rs8127171	0.87[EUR][1000 genomes]
rs8128761	1.00[ASN][1000 genomes]
rs8134022	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv834099	chr21:41076873-41206030	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41160000-41163600	Enhancers	Fetal Heart	heart
2	chr21:41160600-41163200	Weak transcription	Colon Smooth Muscle	Colon
3	chr21:41161000-41171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr21:41161200-41163600	Weak transcription	Fetal Stomach	stomach
5	chr21:41161200-41168000	Weak transcription	Right Ventricle	heart
6	chr21:41161400-41163600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr21:41161400-41164600	Weak transcription	Placenta	Placenta
8	chr21:41161400-41170400	Weak transcription	Right Atrium	heart
9	chr21:41161400-41180000	Weak transcription	Pancreas	Pancrea
10	chr21:41162600-41170200	Weak transcription	Left Ventricle	heart
11	chr21:41163000-41163400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links