Variant report

Variant	rs73219489
Chromosome Location	chr21:41179200-41179201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:41178535..41181156-chr21:41183661..41185952,2	MCF-7	breast:
2	chr21:41164154..41166617-chr21:41178349..41181058,2	MCF-7	breast:
3	chr21:41173962..41176069-chr21:41178013..41180055,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16998436	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16998444	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16998490	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16998519	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16998521	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16998532	0.91[EUR][1000 genomes]
rs16998534	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16998550	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16998553	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16998556	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16998576	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17753538	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2837204	0.81[EUR][1000 genomes]
rs458297	1.00[ASN][1000 genomes]
rs459814	0.87[ASN][1000 genomes]
rs460289	1.00[ASN][1000 genomes]
rs462782	0.87[ASN][1000 genomes]
rs463943	1.00[ASN][1000 genomes]
rs55739464	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56955296	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67969662	0.92[EUR][1000 genomes]
rs73215346	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73217283	0.94[EUR][1000 genomes]
rs73217284	0.94[EUR][1000 genomes]
rs73217286	0.94[EUR][1000 genomes]
rs73217292	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73217299	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73217300	0.96[EUR][1000 genomes]
rs73219407	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73219481	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73219482	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73219485	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73219486	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73219490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73219491	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73221250	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73904418	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73904443	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8127368	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv834099	chr21:41076873-41206030	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41161400-41180000	Weak transcription	Pancreas	Pancrea
2	chr21:41164200-41185600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:41176800-41184200	Weak transcription	Fetal Brain Male	brain
4	chr21:41177000-41180800	Weak transcription	Fetal Heart	heart
5	chr21:41177800-41179200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr21:41177800-41179200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr21:41178000-41179400	Weak transcription	Fetal Lung	lung
8	chr21:41178000-41182200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr21:41178600-41180600	Enhancers	Placenta	Placenta
10	chr21:41179200-41179400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr21:41179200-41179400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr21:41179200-41179600	Enhancers	Colon Smooth Muscle	Colon
13	chr21:41179200-41180800	Enhancers	Gastric	stomach
14	chr21:41179200-41181000	Enhancers	Stomach Mucosa	stomach

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