Variant report

Variant	rs73226553
Chromosome Location	chr2:21117151-21117152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11893093	1.00[EUR][1000 genomes]
rs12713675	1.00[EUR][1000 genomes]
rs12720770	1.00[EUR][1000 genomes]
rs12720812	1.00[EUR][1000 genomes]
rs12720813	1.00[EUR][1000 genomes]
rs12720852	1.00[EUR][1000 genomes]
rs12720855	1.00[EUR][1000 genomes]
rs1437408	1.00[EUR][1000 genomes]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	1.00[EUR][1000 genomes]
rs340608	1.00[EUR][1000 genomes]
rs340614	1.00[EUR][1000 genomes]
rs548324	1.00[EUR][1000 genomes]
rs553687	1.00[EUR][1000 genomes]
rs571566	1.00[EUR][1000 genomes]
rs582107	1.00[EUR][1000 genomes]
rs59995050	1.00[EUR][1000 genomes]
rs61072469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61743299	1.00[EUR][1000 genomes]
rs642152	1.00[EUR][1000 genomes]
rs648568	1.00[EUR][1000 genomes]
rs662193	1.00[EUR][1000 genomes]
rs6759981	1.00[EUR][1000 genomes]
rs72654435	1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72888855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72888859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890738	1.00[AMR][1000 genomes]
rs72890747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890758	1.00[EUR][1000 genomes]
rs72890763	1.00[EUR][1000 genomes]
rs72890771	1.00[EUR][1000 genomes]
rs72890775	1.00[EUR][1000 genomes]
rs72890778	1.00[EUR][1000 genomes]
rs72890781	1.00[EUR][1000 genomes]
rs72890784	1.00[EUR][1000 genomes]
rs72890789	1.00[EUR][1000 genomes]
rs72890791	1.00[EUR][1000 genomes]
rs72902534	1.00[EUR][1000 genomes]
rs72902535	1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	1.00[EUR][1000 genomes]
rs73224614	1.00[EUR][1000 genomes]
rs73226544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs839914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21114200-21127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21115200-21120000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:21115400-21117800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:21115400-21118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:21115400-21119800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:21115400-21120200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:21116200-21118600	Enhancers	NHLF	lung
8	chr2:21116200-21118800	Enhancers	NHEK	skin
9	chr2:21116400-21117200	Enhancers	Stomach Smooth Muscle	stomach
10	chr2:21116400-21117600	Enhancers	Colon Smooth Muscle	Colon
11	chr2:21116400-21118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:21116400-21118600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:21116400-21118600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:21116400-21119800	Enhancers	Fetal Thymus	thymus
15	chr2:21116600-21117200	Enhancers	Stomach Mucosa	stomach
16	chr2:21116600-21117400	Enhancers	Pancreas	Pancrea
17	chr2:21116600-21118000	Enhancers	Fetal Muscle Leg	muscle
18	chr2:21116600-21118400	Enhancers	HMEC	breast
19	chr2:21116600-21118800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:21116600-21118800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:21116800-21117200	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr2:21116800-21117400	Enhancers	Brain Cingulate Gyrus	brain
23	chr2:21116800-21117400	Enhancers	Lung	lung
24	chr2:21116800-21117400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr2:21116800-21117400	Enhancers	HSMMtube	muscle
26	chr2:21116800-21117400	Enhancers	NH-A	brain
27	chr2:21116800-21117600	Enhancers	Aorta	Aorta
28	chr2:21116800-21117600	Enhancers	Fetal Lung	lung
29	chr2:21116800-21118800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr2:21117000-21117400	Enhancers	Fetal Brain Male	brain
31	chr2:21117000-21117600	Enhancers	Brain Hippocampus Middle	brain
32	chr2:21117000-21117600	Enhancers	HSMM	muscle
33	chr2:21117000-21117600	Flanking Active TSS	Osteobl	bone

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