Variant report
| Variant | rs73226559 |
|---|---|
| Chromosome Location | chr2:21124743-21124744 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:53)
| rs_ID | r2[population] |
|---|---|
| rs11893093 | 1.00[EUR][1000 genomes] |
| rs12713675 | 1.00[EUR][1000 genomes] |
| rs12720770 | 1.00[EUR][1000 genomes] |
| rs12720812 | 1.00[EUR][1000 genomes] |
| rs12720813 | 1.00[EUR][1000 genomes] |
| rs12720852 | 1.00[EUR][1000 genomes] |
| rs12720855 | 1.00[EUR][1000 genomes] |
| rs1437408 | 1.00[EUR][1000 genomes] |
| rs16988071 | 1.00[EUR][1000 genomes] |
| rs1866043 | 1.00[EUR][1000 genomes] |
| rs340605 | 1.00[EUR][1000 genomes] |
| rs340608 | 1.00[EUR][1000 genomes] |
| rs340614 | 1.00[EUR][1000 genomes] |
| rs548324 | 1.00[EUR][1000 genomes] |
| rs553687 | 1.00[EUR][1000 genomes] |
| rs571566 | 1.00[EUR][1000 genomes] |
| rs582107 | 1.00[EUR][1000 genomes] |
| rs59995050 | 1.00[EUR][1000 genomes] |
| rs61072469 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61743299 | 1.00[EUR][1000 genomes] |
| rs642152 | 1.00[EUR][1000 genomes] |
| rs648568 | 1.00[EUR][1000 genomes] |
| rs662193 | 1.00[EUR][1000 genomes] |
| rs6759981 | 1.00[EUR][1000 genomes] |
| rs72654435 | 1.00[EUR][1000 genomes] |
| rs72888848 | 1.00[EUR][1000 genomes] |
| rs72888854 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72888855 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72888859 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72890734 | 1.00[EUR][1000 genomes] |
| rs72890738 | 1.00[AMR][1000 genomes] |
| rs72890747 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72890758 | 1.00[EUR][1000 genomes] |
| rs72890763 | 1.00[EUR][1000 genomes] |
| rs72890771 | 1.00[EUR][1000 genomes] |
| rs72890775 | 1.00[EUR][1000 genomes] |
| rs72890778 | 1.00[EUR][1000 genomes] |
| rs72890781 | 1.00[EUR][1000 genomes] |
| rs72890784 | 1.00[EUR][1000 genomes] |
| rs72890789 | 1.00[EUR][1000 genomes] |
| rs72890791 | 1.00[EUR][1000 genomes] |
| rs72902534 | 1.00[EUR][1000 genomes] |
| rs72902535 | 1.00[EUR][1000 genomes] |
| rs72902538 | 1.00[EUR][1000 genomes] |
| rs72902540 | 1.00[EUR][1000 genomes] |
| rs72902541 | 1.00[EUR][1000 genomes] |
| rs72902542 | 1.00[EUR][1000 genomes] |
| rs72902544 | 1.00[EUR][1000 genomes] |
| rs72902548 | 1.00[EUR][1000 genomes] |
| rs73224614 | 1.00[EUR][1000 genomes] |
| rs73226544 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73226553 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs839914 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv455841 | chr2:21086693-21135577 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv581168 | chr2:21086693-21135577 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21114200-21127800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr2:21120200-21128200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
