Variant report

Variant	rs73230078
Chromosome Location	chr3:136512028-136512029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136502917..136505188-chr3:136511396..136514165,2	MCF-7	breast:
2	chr3:136499197..136501261-chr3:136509704..136512204,2	K562	blood:
3	chr3:136470803..136472971-chr3:136508761..136512286,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1048145	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10513016	0.85[EUR][1000 genomes]
rs16844056	0.82[EUR][1000 genomes]
rs17301365	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17365351	0.85[EUR][1000 genomes]
rs17466223	0.85[EUR][1000 genomes]
rs35127615	0.83[AFR][1000 genomes]
rs56308712	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56888009	0.83[EUR][1000 genomes]
rs57466072	0.83[EUR][1000 genomes]
rs59361983	0.94[EUR][1000 genomes]
rs59616231	0.85[EUR][1000 genomes]
rs59696368	0.85[EUR][1000 genomes]
rs6439655	0.86[ASN][1000 genomes]
rs66471262	0.85[EUR][1000 genomes]
rs66637228	0.83[EUR][1000 genomes]
rs66739346	0.83[EUR][1000 genomes]
rs67231188	0.83[EUR][1000 genomes]
rs67236827	0.85[EUR][1000 genomes]
rs67546863	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6771713	0.81[ASN][1000 genomes]
rs67923745	0.94[EUR][1000 genomes]
rs6799699	0.81[ASN][1000 genomes]
rs68018658	0.86[EUR][1000 genomes]
rs72975363	0.85[EUR][1000 genomes]
rs73230052	0.90[EUR][1000 genomes]
rs73230077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230095	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73231917	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73231937	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73231943	0.81[EUR][1000 genomes]
rs73231944	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73231953	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73231958	0.83[EUR][1000 genomes]
rs73231966	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73231974	0.85[EUR][1000 genomes]
rs73231975	0.85[EUR][1000 genomes]
rs7646563	0.83[EUR][1000 genomes]
rs7646723	0.83[EUR][1000 genomes]
rs923001	0.85[EUR][1000 genomes]
rs9881078	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73230078	IL20RB	cis	Nerve Tibial	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136506400-136521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:136506600-136521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:136506600-136521200	Weak transcription	Hela-S3	cervix
4	chr3:136508800-136513600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:136511000-136513000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:136511200-136512400	Enhancers	Brain Hippocampus Middle	brain
7	chr3:136511200-136512400	Enhancers	Fetal Brain Male	brain
8	chr3:136511200-136513000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:136511200-136513000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:136511200-136513000	Enhancers	Brain Anterior Caudate	brain
11	chr3:136511200-136513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:136511200-136514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:136511400-136512200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:136511400-136512800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:136511400-136513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:136511800-136512200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:136511800-136512800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:136511800-136513000	Enhancers	Primary B cells from cord blood	blood
19	chr3:136511800-136513200	Enhancers	Primary hematopoietic stem cells	blood

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