Variant report

Variant	rs7323366
Chromosome Location	chr13:51970965-51970966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51970484..51973482-chr13:52022310..52025240,2	K562	blood:
2	chr13:51966813..51968638-chr13:51968842..51971836,2	K562	blood:
3	chr13:51970051..51972806-chr13:52025800..52028354,2	MCF-7	breast:
4	chr13:51970413..51974561-chr13:52025794..52028654,4	K562	blood:
5	chr13:51970247..51972973-chr13:51973755..51976105,2	K562	blood:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1970132	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2277445	0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2408364	1.00[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2897913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3930275	1.00[ASW][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4409985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322726	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7325241	0.81[JPT][hapmap]
rs7329338	0.85[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991492	1.00[AFR][1000 genomes]
rs7992256	0.86[JPT][hapmap]
rs9526753	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9526762	1.00[AFR][1000 genomes]
rs9535647	0.82[ASW][hapmap];0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535666	1.00[ASW][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9535695	0.80[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7323366	MED4	cis	parietal	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51935600-51971400	Weak transcription	Gastric	stomach
2	chr13:51945200-51971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51946400-51971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:51948000-51971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:51948600-51971600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:51948600-51971600	Weak transcription	Small Intestine	intestine
9	chr13:51949000-51971400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr13:51949400-51971400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:51949400-51971400	Weak transcription	Esophagus	oesophagus
12	chr13:51949400-51971400	Weak transcription	Pancreas	Pancrea
13	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
14	chr13:51950000-51971400	Weak transcription	Fetal Stomach	stomach
15	chr13:51950000-51971400	Weak transcription	Left Ventricle	heart
16	chr13:51950000-51971800	Weak transcription	Lung	lung
17	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
19	chr13:51952400-51971400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr13:51952600-51971400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:51955200-51973600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:51957200-51971400	Weak transcription	Fetal Intestine Small	intestine
23	chr13:51957400-51978200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr13:51957800-51971600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr13:51957800-51978400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr13:51957800-51986600	Weak transcription	Fetal Thymus	thymus
27	chr13:51958000-51971400	Weak transcription	Fetal Lung	lung
28	chr13:51958000-51971600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr13:51958000-51971600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
31	chr13:51958200-51971400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr13:51958200-51990000	Weak transcription	HMEC	breast
33	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr13:51959200-51981200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr13:51959400-51971400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr13:51959400-51971400	Weak transcription	Placenta	Placenta
37	chr13:51959800-51971600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr13:51959800-51989400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:51960000-51973400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr13:51960400-51971400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr13:51962000-51976200	Weak transcription	Dnd41	blood
42	chr13:51962200-51979400	Weak transcription	HUVEC	blood vessel
43	chr13:51962200-51989600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
46	chr13:51963400-51971600	Weak transcription	Primary T cells from cord blood	blood
47	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr13:51963800-51971400	Weak transcription	HepG2	liver
50	chr13:51964400-51971600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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