Variant report

Variant	rs73234765
Chromosome Location	chr3:142633555-142633556
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16852815	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35783198	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55692570	0.97[EUR][1000 genomes]
rs55932307	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56331970	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56389497	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57217609	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57269734	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57755508	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59064122	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60123913	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60582377	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73232757	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73232770	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234726	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234727	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234728	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234729	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234730	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234735	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234737	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234739	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234742	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234745	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234747	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234749	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234750	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73234753	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142624200-142635000	Weak transcription	Osteobl	bone
2	chr3:142628200-142634000	Weak transcription	Placenta	Placenta
3	chr3:142629600-142635200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:142632200-142634800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:142632200-142635000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:142632600-142635600	Weak transcription	Adipose Nuclei	Adipose
7	chr3:142632800-142634400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:142633200-142633800	Enhancers	K562	blood
9	chr3:142633400-142634800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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