Variant report

Variant	rs73239013
Chromosome Location	chr5:118233027-118233028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17144674	1.00[EUR][1000 genomes]
rs17144719	1.00[EUR][1000 genomes]
rs17144749	1.00[EUR][1000 genomes]
rs17144777	1.00[EUR][1000 genomes]
rs17144807	1.00[EUR][1000 genomes]
rs17144815	1.00[EUR][1000 genomes]
rs56253801	1.00[EUR][1000 genomes]
rs57269254	1.00[EUR][1000 genomes]
rs57626866	1.00[EUR][1000 genomes]
rs57879671	1.00[EUR][1000 genomes]
rs57935306	1.00[EUR][1000 genomes]
rs58272882	1.00[EUR][1000 genomes]
rs58306431	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58511548	1.00[EUR][1000 genomes]
rs58532063	1.00[EUR][1000 genomes]
rs58554745	0.96[AFR][1000 genomes]
rs58886471	1.00[EUR][1000 genomes]
rs58907676	1.00[EUR][1000 genomes]
rs59816467	1.00[EUR][1000 genomes]
rs59960294	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59983556	1.00[EUR][1000 genomes]
rs59989728	1.00[EUR][1000 genomes]
rs60221161	1.00[EUR][1000 genomes]
rs60664847	0.81[AFR][1000 genomes]
rs61128026	1.00[EUR][1000 genomes]
rs61196104	1.00[EUR][1000 genomes]
rs61466105	0.81[AFR][1000 genomes]
rs73236928	1.00[EUR][1000 genomes]
rs73236931	1.00[EUR][1000 genomes]
rs73236934	1.00[EUR][1000 genomes]
rs73236952	1.00[EUR][1000 genomes]
rs73236955	1.00[EUR][1000 genomes]
rs73236956	1.00[EUR][1000 genomes]
rs73236981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239017	1.00[EUR][1000 genomes]
rs73239018	1.00[EUR][1000 genomes]
rs73239038	1.00[EUR][1000 genomes]
rs73239043	1.00[EUR][1000 genomes]
rs73239050	1.00[EUR][1000 genomes]
rs73239054	1.00[EUR][1000 genomes]
rs73239060	0.86[AFR][1000 genomes]
rs73239061	1.00[EUR][1000 genomes]
rs73239063	0.84[AFR][1000 genomes]
rs73239070	1.00[EUR][1000 genomes]
rs73239073	1.00[EUR][1000 genomes]
rs73239075	0.86[AFR][1000 genomes]
rs73253504	1.00[EUR][1000 genomes]
rs865396	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:118218800-118240600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118225000-118247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:118227400-118270600	Weak transcription	Ovary	ovary
6	chr5:118231200-118233600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:118232400-118233400	Enhancers	Fetal Intestine Small	intestine
8	chr5:118232800-118233400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:118233000-118233400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:118233000-118233400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:118233000-118233400	Enhancers	Stomach Mucosa	stomach

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