Variant report

Variant	rs73239053
Chromosome Location	chr5:118249974-118249975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10519564	0.81[ASN][1000 genomes]
rs11954152	0.83[ASN][1000 genomes]
rs12109156	0.81[ASN][1000 genomes]
rs17144824	0.81[ASN][1000 genomes]
rs2377127	0.81[ASN][1000 genomes]
rs34045550	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs55671162	0.81[ASN][1000 genomes]
rs59241413	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6860946	0.84[ASN][1000 genomes]
rs6874399	0.84[ASN][1000 genomes]
rs6880144	0.84[ASN][1000 genomes]
rs73239055	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7734815	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118227400-118270600	Weak transcription	Ovary	ovary
3	chr5:118233400-118259000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
5	chr5:118239400-118257000	Weak transcription	Fetal Lung	lung
6	chr5:118241800-118254400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:118243600-118265000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:118244000-118279600	Weak transcription	Liver	Liver
9	chr5:118244000-118287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:118245000-118260400	Weak transcription	Brain Anterior Caudate	brain
11	chr5:118245000-118272200	Weak transcription	Aorta	Aorta
12	chr5:118245200-118254200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:118245600-118262200	Weak transcription	Primary T cells from cord blood	blood
14	chr5:118246600-118266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:118247600-118251400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:118248800-118251400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:118249000-118251400	Weak transcription	Left Ventricle	heart
18	chr5:118249800-118250200	ZNF genes & repeats	Fetal Heart	heart
19	chr5:118249800-118250400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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