Variant report

Variant	rs73239054
Chromosome Location	chr5:118250462-118250463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118240942..118242563-chr5:118250072..118251996,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17144674	1.00[EUR][1000 genomes]
rs17144719	1.00[EUR][1000 genomes]
rs17144749	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144777	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144807	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17144815	1.00[EUR][1000 genomes]
rs56253801	1.00[EUR][1000 genomes]
rs57269254	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57626866	1.00[EUR][1000 genomes]
rs57879671	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57935306	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58272882	1.00[EUR][1000 genomes]
rs58306431	1.00[EUR][1000 genomes]
rs58511548	1.00[EUR][1000 genomes]
rs58532063	1.00[EUR][1000 genomes]
rs58886471	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58907676	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59816467	1.00[EUR][1000 genomes]
rs59960294	1.00[EUR][1000 genomes]
rs59983556	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59989728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60221161	1.00[EUR][1000 genomes]
rs60372583	0.90[AFR][1000 genomes]
rs61128026	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61196104	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73236928	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73236931	1.00[EUR][1000 genomes]
rs73236934	1.00[EUR][1000 genomes]
rs73236952	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73236955	1.00[EUR][1000 genomes]
rs73236956	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73236981	1.00[EUR][1000 genomes]
rs73239013	1.00[EUR][1000 genomes]
rs73239017	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73239018	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73239038	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73239043	1.00[EUR][1000 genomes]
rs73239050	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73239061	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73239070	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73239073	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73253504	1.00[EUR][1000 genomes]
rs865396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:118227400-118270600	Weak transcription	Ovary	ovary
3	chr5:118233400-118259000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas
5	chr5:118239400-118257000	Weak transcription	Fetal Lung	lung
6	chr5:118241800-118254400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:118243600-118265000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:118244000-118279600	Weak transcription	Liver	Liver
9	chr5:118244000-118287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:118245000-118260400	Weak transcription	Brain Anterior Caudate	brain
11	chr5:118245000-118272200	Weak transcription	Aorta	Aorta
12	chr5:118245200-118254200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:118245600-118262200	Weak transcription	Primary T cells from cord blood	blood
14	chr5:118246600-118266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:118247600-118251400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:118248800-118251400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:118249000-118251400	Weak transcription	Left Ventricle	heart
18	chr5:118250000-118261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:118250200-118250800	Weak transcription	Fetal Heart	heart
20	chr5:118250400-118250800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:118250400-118257600	Weak transcription	Fetal Kidney	kidney
22	chr5:118250400-118289400	Weak transcription	Primary B cells from peripheral blood	blood

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