Variant report

Variant	rs73242924
Chromosome Location	chr5:118445599-118445600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118442391..118447973-chr5:118448057..118454025,9	K562	blood:
2	chr5:118442538..118444845-chr5:118444949..118447296,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2197797	1.00[EUR][1000 genomes]
rs56777416	1.00[EUR][1000 genomes]
rs58506278	1.00[EUR][1000 genomes]
rs59560401	1.00[EUR][1000 genomes]
rs60943459	1.00[EUR][1000 genomes]
rs6881087	1.00[EUR][1000 genomes]
rs73240756	1.00[EUR][1000 genomes]
rs73240769	1.00[EUR][1000 genomes]
rs73240789	1.00[EUR][1000 genomes]
rs73240798	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73240800	1.00[EUR][1000 genomes]
rs73242936	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73242938	1.00[EUR][1000 genomes]
rs73242944	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73242969	1.00[EUR][1000 genomes]
rs73242972	1.00[EUR][1000 genomes]
rs73242991	1.00[EUR][1000 genomes]
rs73244806	1.00[EUR][1000 genomes]
rs73244821	1.00[EUR][1000 genomes]
rs73247063	1.00[EUR][1000 genomes]
rs73791001	1.00[EUR][1000 genomes]
rs7712826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882774	chr5:118325429-118553470	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv3511406	chr5:118409810-118459495	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3511407	chr5:118409863-118459482	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118407800-118456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:118408400-118451800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:118409000-118471200	Weak transcription	Gastric	stomach
4	chr5:118412200-118522800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:118414400-118472200	Weak transcription	Pancreas	Pancrea
6	chr5:118415200-118447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:118415400-118471600	Weak transcription	Right Ventricle	heart
8	chr5:118416000-118452600	Weak transcription	Psoas Muscle	Psoas
9	chr5:118417000-118446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:118417000-118459200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:118417200-118451200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:118417200-118453800	Weak transcription	K562	blood
13	chr5:118419000-118451800	Weak transcription	HUVEC	blood vessel
14	chr5:118424400-118452000	Weak transcription	Hela-S3	cervix
15	chr5:118424400-118452000	Weak transcription	Osteobl	bone
16	chr5:118424400-118454400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:118424600-118451800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:118424800-118451600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:118427000-118458200	Weak transcription	Spleen	Spleen
20	chr5:118427600-118450200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:118427800-118455800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:118430200-118471400	Weak transcription	Colonic Mucosa	Colon
23	chr5:118430800-118472200	Weak transcription	Esophagus	oesophagus
24	chr5:118431000-118472200	Weak transcription	Small Intestine	intestine
25	chr5:118431400-118453000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:118432200-118448200	Weak transcription	Placenta	Placenta
27	chr5:118432200-118451600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:118432200-118451600	Weak transcription	HSMM	muscle
29	chr5:118432600-118448800	Strong transcription	Primary B cells from cord blood	blood
30	chr5:118432800-118451600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr5:118432800-118459200	Weak transcription	Fetal Brain Female	brain
32	chr5:118433000-118466800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:118433000-118468600	Weak transcription	Fetal Heart	heart
34	chr5:118433400-118452200	Weak transcription	Fetal Kidney	kidney
35	chr5:118433600-118456000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:118433800-118452800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr5:118434000-118457200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr5:118434200-118453200	Weak transcription	HSMMtube	muscle
39	chr5:118434200-118471000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:118435000-118451800	Weak transcription	Aorta	Aorta
41	chr5:118435600-118447600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr5:118435600-118449000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr5:118435600-118450600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr5:118435600-118453200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:118435600-118458200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr5:118435800-118445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr5:118435800-118447800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:118435800-118449200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr5:118435800-118450400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:118435800-118451800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links