Variant report

Variant	rs73246937
Chromosome Location	chr6:164377464-164377465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:163848750..163849490-chr6:164377354..164378030,2	K562	blood:
2	chr6:164372119..164374794-chr6:164375081..164377936,2	K562	blood:
3	chr6:164076004..164076555-chr6:164377391..164378026,2	MCF-7	breast:
4	chr6:163833857..163837025-chr6:164376036..164378229,3	K562	blood:
5	chr6:164372000..164374794-chr6:164375740..164377936,2	K562	blood:
6	chr6:164376263..164380989-chr6:164381516..164384379,4	K562	blood:
7	chr6:164377373..164378320-chr6:164527287..164527824,2	MCF-7	breast:
8	chr6:164336457..164337059-chr6:164377343..164378061,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962696	1.00[AMR][1000 genomes]
rs11969685	1.00[AMR][1000 genomes]
rs176240	1.00[AMR][1000 genomes]
rs2576195	1.00[AMR][1000 genomes]
rs34305741	1.00[AMR][1000 genomes]
rs426550	1.00[AMR][1000 genomes]
rs59173227	1.00[AMR][1000 genomes]
rs60334591	1.00[AMR][1000 genomes]
rs6920091	1.00[AMR][1000 genomes]
rs73784840	1.00[AMR][1000 genomes]
rs73784855	1.00[AMR][1000 genomes]
rs9456910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164365400-164379400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:164366200-164379200	Weak transcription	Left Ventricle	heart
3	chr6:164366200-164380800	Weak transcription	Right Atrium	heart
4	chr6:164367800-164379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:164367800-164381200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:164368400-164379200	Weak transcription	Brain Germinal Matrix	brain
7	chr6:164368600-164379200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:164368800-164386400	Weak transcription	Brain Angular Gyrus	brain
9	chr6:164371600-164379200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:164373600-164379000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:164373600-164379400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:164373600-164379400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:164374000-164377600	Enhancers	Brain Hippocampus Middle	brain
14	chr6:164374200-164377800	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:164374600-164377600	Enhancers	HSMM	muscle
16	chr6:164374800-164383400	Enhancers	Fetal Heart	heart
17	chr6:164375200-164377800	Enhancers	Fetal Muscle Leg	muscle
18	chr6:164375400-164381400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:164375600-164378800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:164375800-164377600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:164376200-164378800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:164376200-164379200	Weak transcription	Placenta	Placenta
23	chr6:164376400-164377800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:164376400-164378200	Enhancers	Colon Smooth Muscle	Colon
25	chr6:164376400-164379200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:164376400-164379200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:164376400-164380600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:164376400-164380600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:164376400-164381000	Weak transcription	Fetal Brain Male	brain
30	chr6:164376600-164378000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:164376600-164379200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:164376600-164379200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:164376800-164377600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:164376800-164378200	Enhancers	Brain Substantia Nigra	brain
35	chr6:164377000-164377600	Weak transcription	NHEK	skin
36	chr6:164377000-164377800	Enhancers	Brain Anterior Caudate	brain
37	chr6:164377200-164377800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:164377200-164378200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr6:164377200-164379200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:164377200-164379200	Weak transcription	NH-A	brain
41	chr6:164377200-164380200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:164377400-164377800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:164377400-164377800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:164377400-164377800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:164377400-164377800	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:164377400-164377800	Weak transcription	HSMMtube	muscle
47	chr6:164377400-164378000	Enhancers	Liver	Liver
48	chr6:164377400-164379400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:164377400-164380800	Weak transcription	Psoas Muscle	Psoas

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