Variant report

Variant	rs73255189
Chromosome Location	chr8:62825691-62825692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62815283..62816844-chr8:62823393..62825914,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10111776	0.83[EUR][1000 genomes]
rs1400499	0.85[EUR][1000 genomes]
rs1516996	0.80[EUR][1000 genomes]
rs1516998	0.80[EUR][1000 genomes]
rs1516999	0.80[EUR][1000 genomes]
rs1607124	0.85[EUR][1000 genomes]
rs1607126	0.82[EUR][1000 genomes]
rs168252	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs180751	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1850369	0.83[EUR][1000 genomes]
rs1966106	0.85[EUR][1000 genomes]
rs237413	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28377818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28379606	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28400370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28558888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs344200	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344203	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344206	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs344207	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344209	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344210	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344219	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344220	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344230	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344231	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344232	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344233	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344234	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344236	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344238	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344240	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344241	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344242	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs344248	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344251	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344252	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs344254	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344270	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344272	0.89[EUR][1000 genomes]
rs344273	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344274	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs344281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs344307	0.98[EUR][1000 genomes]
rs344310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35594910	0.83[EUR][1000 genomes]
rs58080416	0.80[EUR][1000 genomes]
rs58587861	0.80[EUR][1000 genomes]
rs58710029	0.80[EUR][1000 genomes]
rs60415651	0.80[EUR][1000 genomes]
rs60520860	0.80[EUR][1000 genomes]
rs62135	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6471975	0.80[EUR][1000 genomes]
rs679344	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs681078	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73255147	0.80[EUR][1000 genomes]
rs73255155	0.80[EUR][1000 genomes]
rs73255157	0.80[EUR][1000 genomes]
rs73682603	0.80[EUR][1000 genomes]
rs73685158	0.80[EUR][1000 genomes]
rs73685159	0.80[EUR][1000 genomes]
rs7821502	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv611427	chr8:62733267-62848952	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1032414	chr8:62789246-62861376	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv982136	chr8:62816124-62828493	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62823800-62826200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:62824000-62826200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:62824000-62826400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:62824000-62826600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:62824800-62825800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:62824800-62826600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:62825000-62826000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:62825000-62826000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:62825200-62825800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:62825200-62827200	Enhancers	Hela-S3	cervix
11	chr8:62825400-62825800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:62825400-62826200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr8:62825400-62826200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:62825400-62826400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:62825600-62826600	Enhancers	H1 Cell Line	embryonic stem cell

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