Variant report

Variant	rs73258808
Chromosome Location	chr5:116808039-116808040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13159905	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13164003	1.00[ASN][1000 genomes]
rs17141817	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17141919	0.91[ASN][1000 genomes]
rs197448	0.83[ASN][1000 genomes]
rs265924	0.83[ASN][1000 genomes]
rs265925	0.83[ASN][1000 genomes]
rs55688554	1.00[ASN][1000 genomes]
rs56362592	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57106106	0.91[ASN][1000 genomes]
rs61265792	0.91[ASN][1000 genomes]
rs62380099	1.00[ASN][1000 genomes]
rs73258853	0.91[ASN][1000 genomes]
rs73258859	0.91[ASN][1000 genomes]
rs73258885	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116807800-116809000	Weak transcription	Brain Germinal Matrix	brain
2	chr5:116808000-116808800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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