Variant report

Variant	rs73258859
Chromosome Location	chr5:116838277-116838278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13159905	0.91[ASN][1000 genomes]
rs13164003	0.91[ASN][1000 genomes]
rs17141817	0.91[ASN][1000 genomes]
rs17141919	1.00[ASN][1000 genomes]
rs197448	0.92[ASN][1000 genomes]
rs265924	0.92[ASN][1000 genomes]
rs265925	0.92[ASN][1000 genomes]
rs55688554	0.91[ASN][1000 genomes]
rs56362592	0.91[ASN][1000 genomes]
rs57106106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61265792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62380099	0.91[ASN][1000 genomes]
rs73258808	0.91[ASN][1000 genomes]
rs73258853	1.00[ASN][1000 genomes]
rs73258885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262745	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2763493	chr5:116826714-116841438	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv830458	chr5:116831747-117003041	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116834000-116839800	Weak transcription	NHDF-Ad	bronchial
2	chr5:116834200-116839600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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