Variant report

Variant	rs73259231
Chromosome Location	chr8:63281662-63281663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60317932	1.00[AFR][1000 genomes]
rs60878805	1.00[AFR][1000 genomes]
rs73259209	1.00[AFR][1000 genomes]
rs73259213	1.00[AFR][1000 genomes]
rs73259244	1.00[AFR][1000 genomes]
rs73259248	1.00[AFR][1000 genomes]
rs73259270	1.00[AFR][1000 genomes]
rs73259280	1.00[AFR][1000 genomes]
rs73259292	1.00[AFR][1000 genomes]
rs73265391	1.00[AFR][1000 genomes]
rs73267389	1.00[AFR][1000 genomes]
rs73269448	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890957	chr8:63266645-63310921	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890958	chr8:63278209-63327490	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63276000-63281800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr8:63281200-63282000	Weak transcription	Fetal Intestine Large	intestine
3	chr8:63281400-63282000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:63281400-63282000	Enhancers	A549	lung
5	chr8:63281400-63282200	Weak transcription	Fetal Intestine Small	intestine
6	chr8:63281400-63283600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:63281600-63283800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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