Variant report

Variant	rs73262336
Chromosome Location	chr12:10273840-10273841
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11831375	1.00[AMR][1000 genomes]
rs2927559	1.00[AMR][1000 genomes]
rs36171638	1.00[AMR][1000 genomes]
rs59357284	1.00[AMR][1000 genomes]
rs73256668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73256676	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258612	1.00[AMR][1000 genomes]
rs73262344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10264200-10275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:10264600-10281000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:10268800-10278800	Weak transcription	Spleen	Spleen
4	chr12:10273000-10276000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:10273600-10274000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr12:10273600-10276000	Genic enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:10273800-10274200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:10273800-10274200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:10273800-10274400	Active TSS	Primary B cells from cord blood	blood
10	chr12:10273800-10274400	Enhancers	Primary hematopoietic stem cells	blood
11	chr12:10273800-10274800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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