Variant report

Variant	rs73265178
Chromosome Location	chr6:166803715-166803716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12374608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939560	1.00[AMR][1000 genomes]
rs73265159	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265170	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265201	0.87[AFR][1000 genomes]
rs73788284	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166804200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:166797600-166808200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
4	chr6:166797800-166803800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:166797800-166804000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:166798000-166812200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:166801600-166804200	Enhancers	Liver	Liver
8	chr6:166802400-166822400	Weak transcription	Gastric	stomach
9	chr6:166802800-166804600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:166803000-166804600	Enhancers	HepG2	liver
11	chr6:166803200-166804200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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