Variant report

Variant	rs73266957
Chromosome Location	chr14:33197643-33197644
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33190851..33193807-chr14:33195720..33198266,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131793	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1013682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149509	0.85[EUR][1000 genomes]
rs1295912	0.94[AMR][1000 genomes]
rs17440692	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17440720	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300831	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300832	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300834	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300837	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474642	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41285498	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981999	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4982001	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982002	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266980	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33189200-33198000	Weak transcription	Fetal Brain Female	brain
2	chr14:33192200-33198200	Weak transcription	Right Ventricle	heart
3	chr14:33192400-33207200	Weak transcription	Left Ventricle	heart
4	chr14:33194600-33202800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:33194600-33225600	Weak transcription	Aorta	Aorta
6	chr14:33194800-33202600	Enhancers	Brain Substantia Nigra	brain
7	chr14:33194800-33222200	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:33195000-33198600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:33195000-33199400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:33195000-33200000	Weak transcription	Liver	Liver
11	chr14:33195000-33204600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:33195200-33205600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:33195200-33209200	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:33195800-33198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:33195800-33202200	Weak transcription	HSMMtube	muscle
16	chr14:33196200-33197800	Weak transcription	Brain Germinal Matrix	brain
17	chr14:33196200-33198800	Weak transcription	Fetal Heart	heart
18	chr14:33196200-33208000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:33196800-33198000	Enhancers	Brain Cingulate Gyrus	brain
20	chr14:33196800-33199200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:33196800-33200400	Enhancers	Brain Hippocampus Middle	brain
22	chr14:33197000-33198400	Enhancers	Brain Anterior Caudate	brain
23	chr14:33197000-33199200	Enhancers	Brain Angular Gyrus	brain
24	chr14:33197200-33198000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:33197200-33198000	Weak transcription	Fetal Brain Male	brain
26	chr14:33197200-33199800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:33197600-33198400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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